YRC Public Data Repository - Protein Structure Prediction

Protein:	PSMC4
Organism:	Homo sapiens
Length:	418 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSMC4.

Description	E-value	Query Range	Subject Range
gi\|26341428 - gi\|26341428\|dbj\|BAC34376.1\| unnamed protein product [Mus musculus]	8.0E-90	[1..418]	[1..418]
gi\|263099 - gi\|263099\|gb\|AAB24841.1\| Tat binding protein 7, TBP-7=transcriptional activator [human, Peptide, 458...	9.0E-90	[1..401]	[1..401]
PRS6B_MOUSE - 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=2 PRS6B_RAT - 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1	2.0E-89	[1..418]	[1..418]
gi\|61369393, gi\|... - gi\|61369396\|gb\|AAX43329.1\| proteasome 26S subunit 4 [synthetic construct], gi\|61369393\|gb\|AAX43328.1...	2.0E-89	[1..418]	[1..418]

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Predicted Domain #1

Region A:
Residues: [1-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIGILVEK AQDEIPALSV SRPQTGLSFL GPEPEDLEDL YSRYKKLQQE LEFLEVQEEY  60
   61 IKDEQKNLKK EFLHAQEEVK RIQSIPLVIG QFLEAVDQNT AIVGSTTGSN YYVRILSTID 120
  121 RELLKPNASV ALHKHSNALV DVLPPEADSS IMMLTSDQKP DVMYADIGGM DIQKQEVREA 180
  181 VELPLTHFEL YKQIGIDPPR GVLMYGPPGC GKTMLAKAVA HHTTAAFIRV VGSEFVQKYL 240
  241 GEGPRMVRDV FRLAKENAPA IIFIDEIDAI ATKRFDAQTG ADREVQRILL ELLNQMDGFD 300
  301 QNVNVKVIMA TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLIFSTITS KMNLSEEVDL 360
  361 EDYVARPDKI SGADINSICQ ESGMLAVREN RYIVLAKDFE KAYKTVIKKD EQEHEFYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.09691
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits