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View Structure Prediction Details

Protein: RPLP2
Organism: Homo sapiens
Length: 115 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPLP2.

Description E-value Query
Range
Subject
Range
gi|39582094, gi|... - gi|39582094|emb|CAE63737.1| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi|187032828|em...
gi|157747115 - gi|157747115|ref|XP_001668652.1| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]
3.0E-26 [1..115] [1..110]
gi|50800573 - gi|50800573|ref|XP_424134.1| PREDICTED: hypothetical protein [Gallus gallus]
3.0E-24 [1..115] [1..115]
gi|110765226, gi... - ref|XP_392860.1| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi|110765226|ref|XP_00...
3.0E-24 [1..115] [1..114]
RLA2_BRUMA - 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1
1.0E-23 [1..115] [2..114]
gi|56757219 - gi|56757219|gb|AAW26781.1| SJCHGC01207 protein [Schistosoma japonicum]
1.0E-22 [1..115] [1..115]
gi|10177851, gi|... - gi|67633816|gb|AAY78832.1| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi|15238...
2.0E-22 [5..115] [10..111]
gi|77416939 - gi|77416939|gb|ABA81865.1| unknown [Solanum tuberosum]
2.0E-22 [1..72] [1..72]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYVASYLLA ALGGNSSPSA KDIKKILDSV GIEADDDRLN KVISELNGKN IEDVIAQGIG  60
   61 KLASVPAGGA VAVSAAPGSA APAAGSAPAA AEEKKDEKKE ESEESDDDMG FGLFD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.744727
Match: PF00428.10
Description: No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.247 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.221 N/A N/A d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.209 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle