YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30089997, gi\|...
Organism:	Homo sapiens
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30089997, gi|....

Description	E-value	Query Range	Subject Range
gi\|109489498 - gi\|109489498\|ref\|XP_001076100.1\| PREDICTED: similar to Actin, cytoplasmic 2 (Gamma-actin) [Rattus no...	0.0	[6..386]	[341..683]
gi\|45269029 - gi\|45269029\|gb\|AAS55927.1\| cytoskeletal beta actin [Sus scrofa]	0.0	[6..386]	[61..403]
gi\|18565104 - gi\|18565104\|dbj\|BAB84579.1\| Actin 2 [Crassostrea gigas]	0.0	[6..386]	[33..375]
gi\|224305 - gi\|224305\|prf\|\|1101351B actin	0.0	[6..386]	[31..373]
gi\|94373495 - gi\|94373495\|ref\|XP_001052054.1\| PREDICTED: actin, gamma, cytoplasmic 1 [Mus musculus]	0.0	[6..386]	[59..401]
gi\|16924319 - gi\|16924319\|gb\|AAH17450.1\|AAH17450 Unknown (protein for IMAGE:3538275) [Homo sapiens]	0.0	[6..386]	[20..362]
gi\|109729854 - gi\|109729854\|gb\|ABG46341.1\| actin [Aedes albopictus]	0.0	[6..386]	[33..375]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVERDDGST LMEIDGDKGK QGGPTYYIDT NALRVPRENM EAISPLKNGM VEDWDSFQAI  60
   61 LDHTYKMHVK SEASLHPVLM SEAPWNTRAK REKLTELMFE HYNIPAFFLC KTAVLTAFAN 120
  121 GRSTGLILDS GATHTTAIPV HDGYVLQQGI VKSPLAGDFI TMQCRELFQE MNIELVPPYM 180
  181 IASKEAVREG SPANWKRKEK LPQVTRSWHN YMCNCVIQDF QASVLQVSDS TYDEQVAAQM 240
  241 PTVHYEFPNG YNCDFGAERL KIPEGLFDPS NVKGLSGNTM LGVSHVVTTS VGMCDIDIRP 300
  301 GLYGSVIVAG GNTLIQSFTD RLNRELSQKT PPSMRLKLIA NNTTVERRFS SWIGGSILAS 360
  361 LGTFQQMWIS KQEYEEGGKQ CVERKCP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	140.0
Match:	1hluA
Description:	Actin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits