| Protein: | SFPQ |
| Organism: | Homo sapiens |
| Length: | 707 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFPQ.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-81 | [293..707] | [7..422] |
|
|
2.0E-80 | [293..707] | [7..422] |
|
|
3.0E-79 | [294..700] | [36..436] |
|
|
8.0E-76 | [293..707] | [7..422] |
|
Region A: Residues: [1-205] |
1 11 21 31 41 51
| | | | | |
1 MSRDRFRSRG GGGGGFHRRG GGGGRGGLHD FRSPPPGMGL NQNRGPMGPG PGQSGPKPPI 60
61 PPPPPHQQQQ QPPPQQPPPQ QPPPHQPPPH PQPHQQQQPP PPPQDSSKPV VAQGPGPAPG 120
121 VGSAPPASSS APPATPPTSG APPGSGPGPT PTPPPAVTSA PPGAPPPTPP SSGVPTTPPQ 180
181 AGGPPPPPAA VPGPGPGPKQ GPGPG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [206-289] |
1 11 21 31 41 51
| | | | | |
1 GPKGGKMPGG PKPGGGPGLS TPGGHPKPPH RGGGEPRGGR QHHPPYHQQH HQGPPPGGPG 60
61 GRSEEKISDS EGFKANLSLL RRPG
|
| Detection Method: | |
| Confidence: | 1.04 |
| Match: | 1wckA |
| Description: | Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [290-370] |
1 11 21 31 41 51
| | | | | |
1 EKTYTQRCRL FVGNLPADIT EDEFKRLFAK YGEPGEVFIN KGKGFGFIKL ESRALAEIAK 60
61 AELDDTPMRG RQLRVRFATH A
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 2cpjA |
| Description: | Solution structure of the N-terminal RNA recognition motif of NonO |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [371-552] |
1 11 21 31 41 51
| | | | | |
1 AALSVRNLSP YVSNELLEEA FSQFGPIERA VVIVDDRGRS TGKGIVEFAS KPAARKAFER 60
61 CSEGVFLLTT TPRPVIVEPL EQLDDEDGLP EKLAQKNPMY QKERETPPRF AQHGTFEYEY 120
121 SQRWKSLDEM EKQQREQVEK NMKDAKDKLE SEMEDAYHEH QANLLRQDLM RRQEELRRME 180
181 EL
|
| Detection Method: | |
| Confidence: | 5.06 |
| Match: | 1fnxH |
| Description: | Hu antigen C (Huc) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [553-707] |
1 11 21 31 41 51
| | | | | |
1 HNQEMQKRKE MQLRQEEERR RREEEMMIRQ REMEEQMRRQ REESYSRMGY MDPRERDMRM 60
61 GGGGAMNMGD PYGSGGQKFP PLGGGGGIGY EANPGVPPAT MSGSMMGSDM RTERFGQGGA 120
121 GPVGGQGPRG MGPGTPAGYG RGREEYEGPN KKPRF
|
| Detection Method: | |
| Confidence: | 27.0 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
