YRC Public Data Repository - Protein Structure Prediction

Protein:	ORMDL2
Organism:	Homo sapiens
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ORMDL2.

Description	E-value	Query Range	Subject Range
gi\|109114982 - gi\|109114982\|ref\|XP_001087628.1\| PREDICTED: similar to ORM1-like 3 [Macaca mulatta]	5.0E-73	[1..153]	[183..335]
gi\|114145802, gi... - gi\|45478206\|gb\|AAS66274.1\| LRRGT00183 [Rattus norvegicus], gi\|114145802\|ref\|NP_001041362.1\| ORM1-lik...	1.0E-67	[1..153]	[28..180]
ORML1_MOUSE - ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1	3.0E-65	[1..153]	[1..153]
ORML1_XENLA - ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE=2 SV=1	8.0E-65	[1..153]	[1..153]
ORMDL1 - ORM1-like 1 (S. cerevisiae) ORML1_PONAB - ORM1-like protein 1 OS=Pongo abelii GN=ORMDL1 PE=2 SV=1 gi\|114582244, gi... - gi\|114582250\|ref\|XP_001165741.1\| PREDICTED: ORM1-like 1 isoform 8 [Pan troglodytes], gi\|114582248\|re... ORML1_PONPY - ORM1-like protein 1 - Pongo pygmaeus (Orangutan) gi\|90079047 - gi\|90079047\|dbj\|BAE89203.1\| unnamed protein product [Macaca fascicularis] CCDS2301.1_1 - null gi\|109100358, gi... - gi\|109100360\|ref\|XP_001107686.1\| PREDICTED: ORM1-like 1 (S. cerevisiae) isoform 5 [Macaca mulatta], ...	2.0E-64	[1..153]	[1..153]
ORML1_BOVIN - ORM1-like protein 1 OS=Bos taurus GN=ORMDL1 PE=2 SV=1	2.0E-64	[1..153]	[1..153]
gi\|74004988 - gi\|74004988\|ref\|XP_848266.1\| PREDICTED: similar to ORM1-like 1 isoform 1 [Canis familiaris]	3.0E-64	[1..153]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVGVAHSEV NPNTRVMNSR GIWLAYIILV GLLHMVLLSI PFFSIPVVWT LTNVIHNLAT  60
   61 YVFLHTVKGT PFETPDQGKA RLLTHWEQMD YGLQFTSSRK FLSISPIVLY LLASFYTKYD 120
  121 AAHFLINTAS LLSVLLPKLP QFHGVRVFGI NKY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.173925
Match:	PF04061.5
Description:	No description for PF04061.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.743	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.656	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.579	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.547	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.535	N/A	N/A	a.24.4	Hemerythrin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits