YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|577307
Organism:	Homo sapiens
Length:	411 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|577307.

Description	E-value	Query Range	Subject Range
gi\|99031626 - gi\|99031626\|pdb\|1X0X\|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Co...	1.0E-83	[58..410]	[2..353]
gi\|11559998, gi\|... - gi\|3023880\|sp\|O35077\|GPDA_RAT Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic (GPD-C) (GPDH-C...	2.0E-83	[66..410]	[4..348]
gi\|60810758 - gi\|60810758\|gb\|AAX36153.1\| glycerol-3-phosphate dehydrogenase 1 [synthetic construct]	2.0E-83	[66..410]	[4..348]
gi\|78365297, gi\|... - gi\|78365297\|ref\|NP_001030431.1\| glycerol-3-phosphate dehydrogenase 1 (soluble) [Bos taurus], gi\|5985...	5.0E-83	[66..410]	[4..348]
GPD1L_XENTR - Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus tropicalis GN=gpd1l PE=2 SV=1	6.0E-83	[63..410]	[4..351]

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Predicted Domain #1

Region A:
Residues: [1-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAGPAPLSAA APGAGRGWPR PLAERRKGRG RRQPLRARLN RRRWAAGQGS TVQAATFGPA  60
   61 MAAAPLKVCI VGSGNWGSAV AKIIGNNVKK LQKFASTVKM WVFEETVNGR KLTDIINNDH 120
  121 ENVKYLPGHK LPENVVAMSN LSEAVQDADL LVFVIPHQFI HRICDEITGR VPKKALGITL 180
  181 IKGIDEGPEG LKLISDIIRE KMGIDISVLM GANIANEVAA EKFCETTIGS KVMENGLLFK 240
  241 ELLQTPNFRI TVVDDADTVE LCGALKNIVA VGAGFCDGLR CGDNTKAAVI RLGLMEMIAF 300
  301 ARIFCKGQVS TATFLESCGV ADLITTCYGG RNRRVAEAFA RTGKTIEELE KEMLNGQKLQ 360
  361 GPQTSAEVYR ILKQKGLLDK FPLFTAVYQI CYESRPVQEM LSCLQSHPEH T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.221849
Match:	2plaA
Description:	No description for 2plaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits