YRC Public Data Repository - Protein Structure Prediction

Protein:	TUBB
Organism:	Homo sapiens
Length:	444 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TUBB.

Description	E-value	Query Range	Subject Range
gi\|48095525 - gi\|48095525\|ref\|XP_392313.1\| PREDICTED: similar to -Tubulin at 56D CG9277-PB, isoform B [Apis mellif...	0.0	[1..443]	[1..443]
gi\|91086093 - gi\|91086093\|ref\|XP_967267.1\| PREDICTED: similar to beta1-tubulin [Tribolium castaneum]	0.0	[1..443]	[1..443]
gi\|157767470 - gi\|157767470\|ref\|XP_001667215.1\| Hypothetical protein CBG16137 [Caenorhabditis briggsae AF16] tbb-4 - tubulin beta chain status:Partially_confirmed UniProt:P41937 protein_id:CAA86310.1 gi\|39596183, gi\|... - gi\|39596183\|emb\|CAE69820.1\| Hypothetical protein CBG16137 [Caenorhabditis briggsae], gi\|187026681\|em...	0.0	[1..442]	[1..442]
gi\|74223737 - gi\|74223737\|dbj\|BAE28709.1\| unnamed protein product [Mus musculus]	0.0	[1..429]	[1..429]
gi\|157132376, gi... - gi\|157132376\|ref\|XP_001656025.1\| tubulin beta chain [Aedes aegypti], gi\|108881720\|gb\|EAT45945.1\| tub...	0.0	[1..443]	[1..443]
gi\|86451920 - gi\|86451920\|gb\|ABC97355.1\| beta tubulin [Streblomastix strix]	0.0	[1..433]	[1..433]
TBB1_MAIZE - Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1	0.0	[1..430]	[1..430]
gi\|182889024, gi... - gi\|182889024\|gb\|AAI64534.1\| Zgc:153264 protein [Danio rerio], gi\|115529425\|ref\|NP_001070241.1\| hypot...	0.0	[1..444]	[1..447]

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Predicted Domain #1

Region A:
Residues: [1-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIVHIQAG QCGNQIGAKF WEVISDEHGI DPTGTYHGDS DLQLDRISVY YNEATGGKYV  60
   61 PRAILVDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN WAKGHYTEGA ELVDSVLDVV 120
  121 RKEAESCDCL QGFQLTHSLG GGTGSGMGTL LISKIREEYP DRIMNTFSVV PSPKVSDTVV 180
  181 EPYNATLSVH QLVENTDETY CIDNEALYDI CFRTLKLTTP TYGDLNHLVS ATMSGVTTCL 240
  241 RFPGQLNADL RKLAVNMVPF PRLHFFMPGF APLTSRGSQQ YRALTVPELT QQVFDAKNMM 300
  301 AACDPRHGRY LTVAAVFRGR MSMKEVDEQM LNVQNKNSSY FVEWIPNNVK TAVCDIPPRG 360
  361 LKMAVTFIGN STAIQELFKR ISEQFTAMFR RKAFLHWYTG EGMDEMEFTE AESNMNDLVS 420
  421 EYQQYQDATA EEEEDFGEEA EEEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ffxB
Description:	Tubulin:stathmin-like domain complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits