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View Structure Prediction Details

Protein: gi|158255592, gi...
Organism: Homo sapiens
Length: 218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|158255592, gi....

Description E-value Query
Range
Subject
Range
gi|73971344 - gi|73971344|ref|XP_866787.1| PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3...
4.0E-72 [1..218] [1..218]
gi|225494, gi|510 - gi|510|emb|CAA28542.1| unnamed protein product [Bos taurus], gi|225494|prf||1304303B clathrin LCa
1.0E-68 [1..218] [1..213]
gi|30585415, gi|... - gi|60653991|gb|AAX29688.1| clathrin light polypeptide [synthetic construct], gi|30585415|gb|AAP36980...
2.0E-67 [1..218] [1..218]
gi|53733998 - gb|AAH84012.1| Unknown (protein for MGC:98180) [Xenopus laevis]
gi|122939192, gi... - gi|74214691|dbj|BAE31185.1| unnamed protein product [Mus musculus], gi|74213812|dbj|BAE29342.1| unna...
5.0E-66 [1..218] [1..218]
CLTA - clathrin, light chain A
gi|208966052 - gi|208966052|dbj|BAG73040.1| clathrin, light chain [synthetic construct]
1.0E-65 [1..218] [1..248]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELDPFGAP AGAPGGPALG NGVAGAGEED PAAAFLAQQE SEIAGIENDE AFAILDGGAP  60
   61 GPQPHGEPPG GPDAVDGVMN GEYYQESNGP TDSYAAISQV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.341 a.118.1 ARM repeat
View Download 0.283 a.4.5 "Winged helix" DNA-binding domain
View Download 0.279 d.150.1 4'-phosphopantetheinyl transferase
View Download 0.224 a.1.1 Globin-like

Predicted Domain #2
Region A:
Residues: [101-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRLQSEPESI RKWREEQMER LEALDANSRK QEAEWKEKAI KELEEWYARQ DEQLQKTKAN  60
   61 NRAAEEAFVN DIDESSPGTE WERVARLCDF NPKSSKQAKD VSRMRSVLIS LKQAPLVH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.045757
Match: 1xi4J
Description: Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle