YRC Public Data Repository - Protein Structure Prediction

Protein:	PLN
Organism:	Homo sapiens
Length:	52 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLN.

Description	E-value	Query Range	Subject Range
gi\|68395792, gi\|... - gi\|68395794\|ref\|XP_706728.1\| PREDICTED: similar to phospholamban isoform 2 [Danio rerio], gi\|6839579...	1.0E-6	[1..36]	[1..36]
IPI:IPI00700845.... - Tax_Id=9913 6 kDa protein, Isoform of A4IFH6, Cardiac phospholamban OS=Bos taurus GN=PLN PE=3 SV=1 PPLA_PIG - Cardiac phospholamban OS=Sus scrofa GN=PLN PE=1 SV=1 gi\|164044 - gi\|164044\|gb\|AAA30884.1\| cardiac phospholamban gi\|164046 - gi\|164046\|gb\|AAC41618.1\| cardiac phospholamban (EC 2.7..1.37) gi\|108374 - pir\|\|S05540 phospholamban - pig PPLA_CANLF - Cardiac phospholamban OS=Canis lupus familiaris GN=PLN PE=1 SV=1	8.0E-6	[1..52]	[1..52]
ENSCJAT00000008095 - null PPLA_RAT - Cardiac phospholamban OS=Rattus norvegicus GN=Pln PE=1 SV=1 tr\|M3W4A6\|M3W4A6... - Cardiac phospholamban OS=Felis catus GN=PLN PE=3 SV=1 ENSMMUT000000312... - null, null gi\|149722912 - gi\|149722912\|ref\|XP_001504215.1\| PREDICTED: similar to Cardiac phospholamban (PLB) [Equus caballus] PPLA_MOUSE - Cardiac phospholamban OS=Mus musculus GN=Pln PE=1 SV=1 gi\|257746 - gi\|257746\|gb\|AAB23706.1\| phospholamban [Mus sp.] gi\|26986719, gi\|... - gi\|26986719\|gb\|AAN86727.1\| phospholamban [Rattus sp.], gi\|247933\|gb\|AAB21903.1\| phospholamban; PLN [... PPLA_RABIT - Cardiac phospholamban OS=Oryctolagus cuniculus GN=PLN PE=1 SV=1	1.0E-5	[1..52]	[1..52]
gi\|38492528 - gi\|38492528\|pdb\|1N7L\|A Chain A, Solution Nmr Structure Of Phospholamban In Detergent Micelles gi\|240104229 - gi\|240104229\|pdb\|2KB7\|P Chain P, Hybrid Solution And Solid-State Nmr Structure Of Monomeric Phosphol...	6.0E-5	[1..52]	[2..53]
PPLA_CHICK - Cardiac phospholamban OS=Gallus gallus GN=PLN PE=2 SV=1	1.0E-4	[1..52]	[1..52]
gi\|47226825 - gi\|47226825\|emb\|CAG06667.1\| unnamed protein product [Tetraodon nigroviridis]	1.0E-4	[1..36]	[1..36]

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Predicted Domain #1

Region A:
Residues: [1-52]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVQYLTRS AIRRASTIEM PQQARQKLQN LFINFCLILI CLLLICIIVM LL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	1zllA
Description:	NMR Structure of Unphosphorylated Human Phospholamban Pentamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits