YRC Public Data Repository - Protein Structure Prediction

Protein:	ZFAND2B
Organism:	Homo sapiens
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZFAND2B.

Description	E-value	Query Range	Subject Range
ZFN2B_RAT - AN1-type zinc finger protein 2B OS=Rattus norvegicus GN=Zfand2b PE=1 SV=1	1.0E-96	[1..257]	[1..257]
ZFN2B_MOUSE - AN1-type zinc finger protein 2B OS=Mus musculus GN=Zfand2b PE=1 SV=1	5.0E-95	[1..257]	[1..257]
gi\|109101052 - gi\|109101052\|ref\|XP_001097402.1\| PREDICTED: similar to zinc finger, AN1-type domain 2B isoform 1 [Ma...	4.0E-94	[1..257]	[1..257]
gi\|76610613, gi\|... - gi\|76610617\|ref\|XP_884001.1\| PREDICTED: similar to CG12795-PA isoform 5 [Bos taurus], gi\|76610613\|re...	8.0E-94	[1..257]	[1..258]
gi\|114583449 - gi\|114583449\|ref\|XP_001146767.1\| PREDICTED: similar to Zinc finger, AN1-type domain 2B [Pan troglody...	9.0E-94	[19..257]	[30..268]
gi\|41389084, gi\|... - gi\|41389084\|gb\|AAH65896.1\| Zinc finger, AN1-type domain 2A [Danio rerio], gi\|41055871\|ref\|NP_956811....	2.0E-80	[1..256]	[1..281]
gi\|112418760, gi... - gi\|147902204\|ref\|NP_001088841.1\| hypothetical protein LOC496150 [Xenopus laevis], gi\|112418760\|gb\|AA...	2.0E-79	[1..256]	[1..262]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFPDLGAHC SEPSCQRLDF LPLKCDACSG IFCADHVAYA QHHCGSAYQK DIQVPVCPLC  60
   61 NVPVPVARGE PPDRAVGEHI D

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.56
Match:	1wysA
Description:	Solution structure of the first zf-AN1 domain of mouse RIKEN cDNA 2310008M20 protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [82-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDCRSDPAQQ KRKIFTNKCE RAGCRQREMM KLTCERCSRN FCIKHRHPLD HDCSGEGHPT  60
   61 SRAGLAAISR AQAVASTSTV PSPSQTMPSC TSPSRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1x4vA
Description:	Solution structure of the zf-AN1 domain from human hypothetical protein LOC130617
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [178-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTRSPSWTAP PVIALQNGLS EDEALQRALE MSLAETKPQV PSCQEEEDLA LAQALSASEA  60
   61 EYQRQQAQSR SSKPSNCSLC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.19
Match:	1q0vA
Description:	Solution Structure of Tandem UIMs of Vps27
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits