YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6716557, gi\|1...
Organism:	Homo sapiens
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6716557, gi|1....

Description	E-value	Query Range	Subject Range
gi\|109460543 - gi\|109460543\|ref\|XP_001053676.1\| PREDICTED: similar to A-kinase anchoring protein 18 ,isoform delta ...	129.0	[0..30]	[104..230]
gi\|109072709 - gi\|109072709\|ref\|XP_001103953.1\| PREDICTED: A-kinase anchor protein 7 [Macaca mulatta]	127.0	[0..15]	[104..237]
AKAP7 - A kinase (PRKA) anchor protein 7 gi\|162319330, gi... - gi\|162319330\|gb\|AAI56907.1\| A kinase (PRKA) anchor protein 7 [synthetic construct], gi\|157169658\|gb\|...	126.0	[0..15]	[104..237]
gi\|60729630 - gi\|60729630\|pir\|\|JC7976 A-kinase anchor protein 7, gamma spliced isoform - mouse	126.0	[0..30]	[104..240]
gi\|114609389 - gi\|114609389\|ref\|XP_518739.2\| PREDICTED: similar to A-kinase anchoring protein 18 gamma [Pan troglod...	125.0	[0..15]	[104..259]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQLCCFPFS RDEGKISELE SSSSAVLQRY SKDIPSWSSG EKNGGEPDDA ELVRLSKRLV  60
   61 ENAVLKAVQQ YLEETQNKNK PGEGSSVKTE AADQNGNDNE NNRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits