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View Structure Prediction Details

Protein: TMED7
Organism: Homo sapiens
Length: 224 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMED7.

Description E-value Query
Range
Subject
Range
gi|109078264, gi... - gi|109078266|ref|XP_001085489.1| PREDICTED: similar to transmembrane emp24 protein transport domain ...
4.0E-71 [1..224] [1..224]
gi|14042242 - gi|14042242|dbj|BAB55166.1| unnamed protein product [Homo sapiens]
1.0E-70 [1..224] [1..224]
TMED7_RAT - Transmembrane emp24 domain-containing protein 7 OS=Rattus norvegicus GN=Tmed7 PE=1 SV=1
2.0E-68 [1..224] [1..226]
gi|73970483 - gi|73970483|ref|XP_858610.1| PREDICTED: similar to transmembrane emp24 protein transport domain cont...
5.0E-67 [1..224] [1..226]
gi|45361367, gi|... - gi|45361367|ref|NP_989261.1| transmembrane emp24 domain containing 3 [Xenopus (Silurana) tropicalis]...
4.0E-63 [19..224] [14..219]
gi|53130058 - gi|53130058|emb|CAG31437.1| hypothetical protein [Gallus gallus]
4.0E-62 [30..224] [25..219]
gi|52354659 - gi|52354659|gb|AAH82914.1| MGC86295 protein [Xenopus laevis]
4.0E-62 [19..224] [14..219]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRPGSAQRW AAVAGRWGCR LLALLLLVPG PGGASEITFE LPDNAKQCFY EDIAQGTKCT  60
   61 LEFQVITGGH YDVDCRLEDP DGKVLYKEMK KQYDSFTFTA SKNGTYKFCF SNEFSTFTHK 120
  121 TVYFDFQVGE DPPLFPSENR VSALTQME

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 24.180456
Match: PF01105.15
Description: No description for PF01105.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [149-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SACVSIHEAL KSVIDYQTHF RLREAQGRSR AEDLNTRVAY WSVGEALILL VVSIGQVFLL  60
   61 KSFFSDKRTT TTRVGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle