YRC Public Data Repository - Protein Structure Prediction

Protein:	SLBP
Organism:	Homo sapiens
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLBP.

Description	E-value	Query Range	Subject Range
SLBP_MOUSE - Histone RNA hairpin-binding protein OS=Mus musculus GN=Slbp PE=1 SV=1	413.0	[0..1]	[270..1]
gi\|189442753, gi... - gi\|195976798\|ref\|NP_001124460.1\| stem-loop binding protein [Rattus norvegicus], gi\|189442753\|gb\|AAI6...	408.0	[0..1]	[270..1]
gi\|114592841 - gi\|114592841\|ref\|XP_001144566.1\| PREDICTED: histone stem-loop binding protein isoform 3 [Pan troglod...	392.0	[0..1]	[270..1]
gi\|73951400 - gi\|73951400\|ref\|XP_545928.2\| PREDICTED: similar to stem-loop binding protein isoform 4 [Canis famili...	386.0	[0..1]	[270..1]
gi\|114053069, gi... - gi\|82571711\|gb\|AAI10147.1\| Histone stem loop binding protein [Bos taurus], gi\|114053069\|ref\|NP_00103...	353.0	[0..1]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACRPRSPPR HQSRCDGDAS PPSPARWSLG RKRRADGRRW RPEDAEEAEH RGAERRPESF  60
   61 TTPEGPKPRS RCSDWASAVE EDEMRTRVNK EMARYKRKLL INDFGRERKS SSGSSDSKES 120
  121 MST

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.347	a.148.1	Arp2/3 complex 21 kDa subunit ARPC3
View	Download	0.301	a.24.4	Hemerythrin
View	Download	0.288	a.148.1	Arp2/3 complex 21 kDa subunit ARPC3
View	Download	0.268	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.266	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.261	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.257	a.24.18	Description not found.
View	Download	0.214	a.4.6	C-terminal effector domain of the bipartite response regulators

Predicted Domain #2

Region A:
Residues: [124-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPADFETDES VLMRRQKQIN YGKNTIAYDR YIKEVPRHLR QPGIHPKTPN KFKKYSRRSW  60
   61 DQQIKLWKVA LHFWDPPAEE GCDLQEIHPV DLESAESSSE PQTSSQDDFD VYSGTPTKVR 120
  121 HMDSQVEDEF DLEACLTEPL RDFSAMS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.269	N/A	N/A	a.182.1	GatB/YqeY domain
View	Download	0.261	N/A	N/A	a.182.1	GatB/YqeY domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits