YRC Public Data Repository - Protein Structure Prediction

Protein:	MARCH1
Organism:	Homo sapiens
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MARCH1.

Description	E-value	Query Range	Subject Range
gi\|109076069, gi... - gi\|109076069\|ref\|XP_001099555.1\| PREDICTED: similar to membrane-associated RING-CH protein I isoform...	6.0E-75	[1..289]	[1..289]
gi\|114596694, gi... - gi\|114596696\|ref\|XP_001148954.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi\|114...	8.0E-75	[1..289]	[1..289]
gi\|74209553 - gi\|74209553\|dbj\|BAE23311.1\| unnamed protein product [Mus musculus]	3.0E-71	[1..289]	[1..285]
gi\|109503238, gi... - gi\|209447115\|ref\|NP_001129310.1\| membrane-associated ring finger (C3HC4) 1 [Rattus norvegicus], gi\|1...	3.0E-62	[38..289]	[34..285]
gi\|119625239, gi... - gi\|8923613\|ref\|NP_060393.1\| membrane-associated RING-CH protein I [Homo sapiens], gi\|7020918\|dbj\|BAA... HGNC:26077\|MIM:6... - ring finger (C3HC4) 1 gi\|157170356, gi... - gi\|208966754\|dbj\|BAG73391.1\| membrane-associated ring finger (C3HC4) 1 [synthetic construct], gi\|157...	9.0E-62	[54..289]	[37..272]

Back

Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGWCEAIAR NPHRIPNNTR TPEISGDLAD ASQTSTLNEK SPGRSASRSS NISKASSPTT  60
   61 GTAPRSQSRL SVCPSTQDIC RICHCEGDEE SPLITPCRCT GTLRFVHQSC LHQWIKSSDT 120
  121 RCCELCKYDF IMETKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.09691
Match:	2d8sA
Description:	No description for 2d8sA was found.

Predicted Domain #2

Region A:
Residues: [138-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRKWEKLQM TTSERRKIFC SVTFHVIAIT CVVWSLYVLI DRTAEEIKQG NDNGVLEWPF  60
   61 WTKLVVVAIG FTGGLVFMYV QCKVYVQLWR RLKAYNRVIF VQNCPDTAKK LEKNFSCNVN 120
  121 TDIKDAVVVP VPQTGANSLP SAEGGPPEVV SV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits