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View Structure Prediction Details

Protein: STT3B
Organism: Homo sapiens
Length: 826 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STT3B.

Description E-value Query
Range
Subject
Range
gi|73989883 - gi|73989883|ref|XP_542747.2| PREDICTED: similar to source of immunodominant MHC-associated peptides ...
903.0 [0..1] [826..1]
gi|12858636 - gi|12858636|dbj|BAB31390.1| unnamed protein product [Mus musculus]
883.0 [0..1] [815..1]
gi|109052604 - gi|109052604|ref|XP_001096091.1| PREDICTED: similar to source of immunodominant MHC-associated pepti...
880.0 [0..1] [826..1]

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Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSAPESK HKSSLNSSPW SGLMALGNSR HGHHGPGAQC AHKAAGGAAP PKPAPAGLSG  60
   61 GLSQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [65-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAGWQSLLSF TILFLAWLAG FSSRLFAVIR FESIIHEFDP WFNYRSTHHL ASHGFYEFLN  60
   61 WFDERAWYPL GRIVGGTVYP GLMITAGLIH WILNTLNITV HIRDVCVFLA PTFSGLTSIS 120
  121 TFLLTRELWN QGAGLLAACF IAIVPGYISR SVAGSFDNEG IAIFALQFTY YLWVKSVKTG 180
  181 SVFWTMCCCL SYFYMVSAWG GYVFIINLIP LHVFVLLLMQ RYSKRVYIAY STFYIVGLIL 240
  241 SMQIPFV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFQPIRTSEH MAAAGVFALL QAYAFLQYLR DRLTKQEFQT LFFLGVSLAA GAVFLSVIYL  60
   61 TYTGYIAP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [380-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSGRFYSLWD TGYAKIHIPI IASVSEHQPT TWVSFFFDLH ILVCTFPAGL WFCIKNINDE  60
   61 RVFVALYAIS AVYFAGVMVR LMLTLTPVVC MLSAIAFSNV FEHYLGDDMK RENPPVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [497-640]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSDEDDKRN QGNLYDKAGK VRKHATEQEK TEEGLGPNIK SIVTMLMLML LMMFAVHCTW  60
   61 VTSNAYSSPS VVLASYNHDG TRNILDDFRE AYFWLRQNTD EHARVMSWWD YGYQIAGMAN 120
  121 RTTLVDNNTW NNSHIALVGK AMSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [641-826]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NETAAYKIMR TLDVDYVLVI FGGVIGYSGD DINKFLWMVR IAEGEHPKDI RESDYFTPQG  60
   61 EFRVDKAGSP TLLNCLMYKM SYYRFGEMQL DFRTPPGFDR TRNAEIGNKD IKFKHLEEAF 120
  121 TSEHWLVRIY KVKAPDNRET LDHKPRVTNI FPKQKYLSKK TTKRKRGYIK NKLVFKKGKK 180
  181 ISKKTV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle