YRC Public Data Repository - Protein Structure Prediction

Protein:	ACTBL2
Organism:	Homo sapiens
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACTBL2.

Description	E-value	Query Range	Subject Range
gi\|109489498 - gi\|109489498\|ref\|XP_001076100.1\| PREDICTED: similar to Actin, cytoplasmic 2 (Gamma-actin) [Rattus no...	0.0	[3..376]	[311..684]
ACT2_SCHMA - Actin-2 OS=Schistosoma mansoni PE=2 SV=1 gi\|6979994, gi\|1... - gi\|6979994\|gb\|AAF34686.1\| actin [Schistosoma japonicum], gi\|189503078\|gb\|ACE06920.1\| unknown [Schist... gi\|186462275 - gi\|186462275\|gb\|ACC78609.1\| actin [Schistosoma bovis]	0.0	[1..376]	[1..376]
ACT5_XENLA - Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1	0.0	[1..376]	[1..376]
gi\|66549344, gi\|... - gi\|66549344\|ref\|XP_623381.1\| PREDICTED: similar to Actin-5C isoform 2 [Apis mellifera], gi\|48137684\|...	0.0	[1..376]	[1..376]
gi\|32330667 - gi\|32330667\|gb\|AAP79880.1\| actin [Boophilus microplus] gi\|60730230 - gi\|60730230\|emb\|CAI63975.1\| actin [Ixodes ricinus] gi\|194303448 - gi\|194303448\|gb\|ABP01547.2\| beta-actin [Dermacentor variabilis]	0.0	[1..376]	[1..376]
gi\|77539277 - gi\|77539277\|dbj\|BAE46505.1\| actin [Ornithodoros moubata]	0.0	[1..376]	[1..376]
gi\|477248 - gi\|477248\|pir\|\|A48449 Actin-1A - nematode (Onchocerca volvulus) gi\|170587332, gi... - gi\|170587334\|ref\|XP_001898432.1\| actin 1 [Brugia malayi], gi\|170587332\|ref\|XP_001898431.1\| actin 1 [...	0.0	[1..376]	[1..376]
gi\|157763022 - gi\|157763022\|ref\|XP_001673853.1\| Hypothetical protein CBG23091 [Caenorhabditis briggsae AF16] CRE18004 - RP38795 WBGene00085263 locus:Cre-act-2 status:Confirmed act-2 - actin status:Confirmed UniProt:P10984 protein_id:CAB04675.1 gi\|187021297, gi... - gi\|39591934\|emb\|CAE75154.1\| Hypothetical protein CBG23091 [Caenorhabditis briggsae], gi\|187021297\|em...	0.0	[1..376]	[1..376]

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Predicted Domain #1

Region A:
Residues: [1-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDNELSALV VDNGSGMCKA GFGGDDAPRA VFPSMIGRPR HQGVMVGMGQ KDCYVGDEAQ  60
   61 SKRGVLTLKY PIEHGVVTNW DDMEKIWYHT FYNELRVAPD EHPILLTEAP LNPKINREKM 120
  121 TQIMFEAFNT PAMYVAIQAV LSLYASGRTT GIVMDSGDGV THIVPIYEGY ALPHAILRLD 180
  181 LAGRDLTDYL MKILTERGYN FTTTAEREIV RDVKEKLCYV ALDFEQEMVR AAASSSPERS 240
  241 YELPDGQVIT IGNERFRCPE AIFQPSFLGI ESSGIHETTF NSIMKCDVDI RKDLYANTVL 300
  301 SGGSTMYPGI ADRMQKEIIT LAPSTMKIKI IAPPERKYSV WIGGSILASL STFQQMWISK 360
  361 QEYDEAGPPI VHRKCF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	158.0
Match:	1hluA
Description:	Actin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits