YRC Public Data Repository - Protein Structure Prediction

Protein:	TNP2
Organism:	Homo sapiens
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TNP2.

Description	E-value	Query Range	Subject Range
gi\|110055, gi\|54874 - gi\|54874\|emb\|CAA34914.1\| unknown protein [Mus musculus], pir\|\|S14529 transition protein 2 - mouse	144.0	[0..1]	[137..403]
gi\|109127617 - gi\|109127617\|ref\|XP_001106917.1\| PREDICTED: similar to Nuclear transition protein 2 (TP-2) (TP2) [Ma...	141.0	[0..1]	[138..52]
gi\|18149003 - gi\|18149003\|dbj\|BAB83536.1\| transition protein 2 [Macaca fascicularis]	126.0	[0..1]	[138..29]
gi\|193073246, gi... - gi\|193073246\|tpg\|DAA06279.1\| TPA_inf: transition protein 2 [Pan troglodytes], gi\|114660997\|ref\|XP_00...	124.0	[0..1]	[138..1]
STP2_PONPY - Nuclear transition protein 2 (Fragment) OS=Pongo pygmaeus GN=TNP2 PE=2 SV=1	117.0	[0..1]	[133..1]
STP2_BOVIN - Nuclear transition protein 2 OS=Bos taurus GN=TNP2 PE=2 SV=2	108.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTQTHSLPI THTQLHSNSQ PQSRTCTRHC QTFSQSCRQS HRGSRSQSSS QSPASHRNPT  60
   61 GAHSSSGHQS QSPNTSPPPK RHKKTMNSHH SPMRPTILHC RCPKNRKNLE GKLKKKKMAK 120
  121 RIQQVYKTKT RSSGWKSN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	101.677781
Match:	PF01254.9
Description:	No description for PF01254.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits