YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13129138, gi\|...
Organism:	Homo sapiens
Length:	486 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13129138, gi|....

Description	E-value	Query Range	Subject Range
gi\|48762794 - gi\|48762794\|gb\|AAT46478.1\| mitogen-activated protein kinase 2-associated protein 1a [Homo sapiens]	826.0	[0..1]	[486..1]
gi\|73968045 - gi\|73968045\|ref\|XP_863189.1\| PREDICTED: similar to mitogen-activated protein kinase associated prote...	822.0	[0..1]	[486..1]
SIN1_RAT - Target of rapamycin complex 2 subunit MAPKAP1 OS=Rattus norvegicus GN=Mapkap1 PE=2 SV=1	807.0	[0..1]	[486..1]
gi\|55726571 - gi\|55726571\|emb\|CAH90052.1\| hypothetical protein [Pongo abelii] SIN1_PONAB - Target of rapamycin complex 2 subunit MAPKAP1 OS=Pongo abelii GN=MAPKAP1 PE=2 SV=1	807.0	[0..1]	[486..1]
SIN1_MOUSE - Target of rapamycin complex 2 subunit MAPKAP1 OS=Mus musculus GN=Mapkap1 PE=1 SV=1	806.0	[0..1]	[486..1]
SIN1_SHEEP - Target of rapamycin complex 2 subunit MAPKAP1 OS=Ovis aries GN=MAPKAP1 PE=1 SV=1	798.0	[0..1]	[486..1]

Back

Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLDNPTII LAHIRQSHVT SDDTGMCEMV LIDHDVDLEK IHPPSMPGDS GSEIQGSNGE  60
   61 TQGYVYAQSV DITSSWDFGI RRRSNTAQRL ERLRKERQNQ IKCKNIQWKE RNSKQSAQEL 120
  121 KSLFEKKSLK EKPPISGKQS ILSVRLEQCP LQLNNPFNEY SKFDGKGHVG TTATKKIDVY 180
  181 LPLHSSQDRL LPMTVVTMAS ARVQDLIGLI CWQYTSEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [219-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REPKLNDNVS AYCLHIAEDD GEVDTDFPPL DSNEPIHKFG FSTLALVEKY SSPGLTSKES  60
   61 LFVRINAAHG FSLIQVDNTK VTMKEILLKA VKRRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [314-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSQKVSGSRA DGVFEEDSQI DIATVQDMLS SHHYKSFKVS MIHRLRFTTD VQLGISGDKV  60
   61 EIDPVTNQKA STKFWIKQKP ISIDSDLLCA CDLAEEKSPS HAIFKLTYLS NHDYKHLYFE 120
  121 SDAATVNEIV LKVNYILESR ASTARADYFA QKQRKLNRRT SFSFQKEKKS GQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits