YRC Public Data Repository - Protein Structure Prediction

Protein:	STAMBPL1
Organism:	Homo sapiens
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STAMBPL1.

Description	E-value	Query Range	Subject Range
STALP_MOUSE - AMSH-like protease OS=Mus musculus GN=Stambpl1 PE=1 SV=1 gi\|55742879 - ref\|NP_083958.3\| AMSH-family protein [Mus musculus]	0.0	[1..436]	[1..436]
gi\|114631679, gi... - gi\|114631681\|ref\|XP_521549.2\| PREDICTED: associated molecule with the SH3 domain of STAM (AMSH) like...	0.0	[1..436]	[1..436]
STALP_PONAB - AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1 STALP_PONPY - AMSH-like protease - Pongo pygmaeus (Orangutan)	0.0	[1..436]	[1..436]
gi\|165970954, gi... - gi\|169234828\|ref\|NP_001108520.1\| hypothetical protein LOC687696 [Rattus norvegicus], gi\|165970954\|gb...	0.0	[1..436]	[1..436]
gi\|7243127 - gi\|7243127\|dbj\|BAA92611.1\| KIAA1373 protein [Homo sapiens]	0.0	[1..435]	[3..436]
gi\|115497652, gi... - gi\|76654504\|ref\|XP_582671.2\| PREDICTED: similar to associated molecule with the SH3 domain of STAM (...	0.0	[1..436]	[1..436]
gi\|109089856 - gi\|109089856\|ref\|XP_001083976.1\| PREDICTED: similar to associated molecule with the SH3 domain of ST...	0.0	[1..433]	[1..432]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQPFTVNSL KKLAAMPDHT DVSLSPEERV RALSKLGCNI TISEDITPRR YFRSGVEMER  60
   61 MASVYLEEGN LENAFVLYNK FITLFVEKLP NHRDYQQCAV PEKQDIMKKL KEIAFPRTDE 120
  121 LKNDLLKKYN VEYQEYLQSK NKYKAEILKK LEHQRLIEAE RKRIAQMRQQ QLESEQFLFF 180
  181 EDQLKKQELA RGQMRSQQTS GLSEQIDGSA LS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	2a9uA
Description:	Structure of the N-terminal domain of Human Ubiquitin carboxyl-terminal hydrolase 8 (USP8)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [213-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CFSTHQNNSL LNVFADQPNK SDATNYASHS PPVNRALTPA ATLSAVQNLV VEGLRCVVLP  60
   61 EDLCHKFLQL AESNTVRGIE TCGILCGKLT HNEFTITHVI VPKQSAGPDY CDMENVEELF 120
  121 NVQDQHDLLT LGWIHTHPTQ TAFLSSVDLH THCSYQLMLP EAIAIVCSPK HKDTGIFRLT 180
  181 NAGMLEVSAC KKKGFHPHTK EPRLFSICKH VLVKDIKIIV LDLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	2p87A
Description:	No description for 2p87A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits