| Protein: | RBM14 |
| Organism: | Homo sapiens |
| Length: | 669 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBM14.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-53 | [3..548] | [13..574] |
|
|
1.0E-52 | [3..548] | [13..596] |
|
|
1.0E-52 | [3..548] | [13..584] |
|
|
2.0E-52 | [3..548] | [13..584] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MKIFVGNVDG ADTTPEELAA LFAPYGTVMS CAVMKQFAFV HMRENAGALR AIEALHGHEL 60
61 RPGRALVVEM SRPRPLNTWK IFVGN
|
| Detection Method: |  |
| Confidence: | 15.69897 |
| Match: | 2dnpA |
| Description: | No description for 2dnpA was found. |
|
Region A: Residues: [86-276] |
1 11 21 31 41 51
| | | | | |
1 VSAACTSQEL RSLFERRGRV IECDVVKDYA FVHMEKEADA KAAIAQLNGK EVKGKRINVE 60
61 LSTKGQKKGP GLAVQSGDKT KKPGAGDTAF PGTGGFSATF DYQQAFGNST GGFDGQARQP 120
121 TPPFFGRDRS PLRRSPPRAS YVAPLTAQPA TYRAQPSVSL GAAYRAQPSA SLGVGYRTQP 180
181 MTAQAASYRA Q
|
| Detection Method: | |
| Confidence: | 3.7 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [277-413] |
1 11 21 31 41 51
| | | | | |
1 PSVSLGAPYR GQLASPSSQS AAASSLGPYG GAQPSASALS SYGGQAAAAS SLNSYGAQGS 60
61 SLASYGNQPS SYGAQAASSY GVRAAASSYN TQGAASSLGS YGAQAASYGA QSAASSLAYG 120
121 AQAASYNAQP SASYNAQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [414-571] |
1 11 21 31 41 51
| | | | | |
1 SAPYAAQQAA SYSSQPAAYV AQPATAAAYA SQPAAYAAQA TTPMAGSYGA QPVVQTQLNS 60
61 YGAQASMGLS GSYGAQSAAA ATGSYGAAAA YGAQPSATLA APYRTQSSAS LAASYAAQQH 120
121 PQAAASYRGQ PGNAYDGAGQ PSAAYLSMSQ GAVANANS
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [572-669] |
1 11 21 31 41 51
| | | | | |
1 TPPPYERTRL SPPRASYDDP YKKAVAMSKR YGSDRRLAEL SDYRRLSESQ LSFRRSPTKS 60
61 SLDYRRLPDA HSDYARYSGS YNDYLRAAQM HSGYQRRM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.261 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.259 | a.74.1 | Cyclin-like |
| View | Download | 0.536 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.225 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.220 | a.74.1 | Cyclin-like |
