YRC Public Data Repository - Protein Structure Prediction

Protein:	SNIP1
Organism:	Homo sapiens
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNIP1.

Description	E-value	Query Range	Subject Range
gi\|14042427 - gi\|14042427\|dbj\|BAB55241.1\| unnamed protein product [Homo sapiens]	1.0E-35	[1..396]	[1..396]
gi\|114555587 - gi\|114555587\|ref\|XP_513324.2\| PREDICTED: Smad nuclear interacting protein [Pan troglodytes]	2.0E-35	[1..396]	[1..396]
gi\|109002111 - gi\|109002111\|ref\|XP_001111700.1\| PREDICTED: similar to Smad nuclear interacting protein [Macaca mula...	3.0E-35	[1..396]	[1..396]
gi\|5802893 - gi\|5802893\|gb\|AAD51818.1\|AF173015_1 N-type calcium channel alpha-1B cdB4 variant [Gallus gallus]	2.0E-34	[2..241]	[765..1031]
gi\|15836244, gi\|... - gi\|8979084\|dbj\|BAA98919.1\| FHA domain [Chlamydophila pneumoniae J138], gi\|15836244\|ref\|NP_300768.1\| ... gi\|4377015, gi\|1... - gi\|4377015\|gb\|AAD18851.1\| adenylate cyclase-like protein [Chlamydophila pneumoniae CWL029], gi\|15618... gi\|7188974, gi\|1... - gi\|7188974\|gb\|AAF37929.1\| conserved hypothetical protein [Chlamydophila pneumoniae AR39], gi\|1675232... gi\|25403965, gi\|... - pir\|\|H72046 Fha domain (homolog to adenylate cyclase) - Chlamydophila pneumoniae (strains CWL029 and...	3.0E-34	[7..385]	[153..512]
gi\|73976968 - gi\|73976968\|ref\|XP_532557.2\| PREDICTED: similar to Smad nuclear interacting protein [Canis familiari...	2.0E-33	[31..396]	[135..500]

Back

Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVKSERER GSRRRHRDGD VVLPAGVVVK QERLSPEVAP PAHRRPDHSG GSPSPPTSEP  60
   61 ARSGHRGNRA RGVSRSPPKK KNKASGRRSK SPRSKRNRSP HHSTVKVKQE REDHPRRGRE 120
  121 DRQHREPSEQ EHRRARNSDR DRHRGHSHQR RTSNERPGSG QGQGRDRDTQ NLQAQEEERE 180
  181 FYNARRREHR QRNDVGGGGS ESQELVPRPG GNNKEKEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [219-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAKEKPSFEL SGALLEDTNT FRGVVIKYSE PPEARIPKKR WRLYPFKNDE VLPVMYIHRQ  60
   61 SAYLLGRHRR IADIPIDHPS CSKQHAVFQY RLVEYTRADG TVGRRVKPYI IDLGSGNGTF 120
  121 LNNKRIEPQR YYELKEKDVL KFGFSSREYV LLHESSDTSE IDRKDDEDEE EEEEVSDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	2jpeA
Description:	No description for 2jpeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits