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View Structure Prediction Details

Protein: gi|13514822, gi|...
Organism: Homo sapiens
Length: 235 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13514822, gi|....

Description E-value Query
Range
Subject
Range
rha-1 - ATP-dependent RNA helicase status:Partially_confirmed UniProt:Q22307 protein_id:CAA90409.2
1.0E-51 [1..207] [1051..1263]
gi|1082769 - gi|1082769|pir||A47363 RNA helicase A - human
4.0E-51 [1..206] [1035..1239]
DHX9_PONAB - ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1
DHX9_PONPY - ATP-dependent RNA helicase A - Pongo pygmaeus (Orangutan)
1.0E-47 [1..206] [1036..1240]
DHX9_XENLA - ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1
6.0E-46 [1..157] [1038..1194]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYPSPFFVF GEKIRTRAIS AKGMTLVTPL QLLLFASKKV QSDGQIVLVD DWIKLQISHE  60
   61 AAACITGLRA AMEALVVEVT KQPAIISQLD PVNERMLNMI RQISRPSAAG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.820 N/A N/A a.71.2 Helical domain of Sec23/24
View Download 0.796 N/A N/A a.24.3 Cytochromes
View Download 0.735 N/A N/A a.48.1 N-terminal domain of cbl (N-cbl)
View Download 0.647 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.583 N/A N/A i.11.1 Computational models partly based on NMR data

Predicted Domain #2
Region A:
Residues: [111-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INLMIGSTRY GDGPRPPKMA RYDNGSGYRR GGSSYSGGGY GGGYSSGGYG SGGYGGSANS  60
   61 FRAGYGAGVG GGYRGVSRGG FRGNSGGDYR GPSGGYRGSG GFQRGGGRGA YGTGYFGQGR 120
  121 GGGGY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle