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View Structure Prediction Details

Protein: CD9
Organism: Homo sapiens
Length: 228 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CD9.

Description E-value Query
Range		 Subject
Range
CD9_BOVIN - CD9 antigen OS=Bos taurus GN=CD9 PE=2 SV=2
 8.0E-56 [1..228] [1..226]
CD9_MOUSE - CD9 antigen OS=Mus musculus GN=Cd9 PE=1 SV=2
 1.0E-55 [1..228] [1..226]
gi|21914408 - gi|21914408|gb|AAM81376.1|AF525029_1 transmembrane protein CD9 [Sus scrofa]
 4.0E-55 [1..228] [1..226]
CD9_RAT - CD9 antigen OS=Rattus norvegicus GN=Cd9 PE=1 SV=2
 2.0E-54 [1..228] [1..226]
gi|109095183, gi... - gi|109095183|ref|XP_001102751.1| PREDICTED: CD9 molecule isoform 2 [Macaca mulatta], gi|109095181|re...
 9.0E-54 [1..228] [1..228]
CD9_CHLAE - CD9 antigen OS=Chlorocebus aethiops GN=CD9 PE=2 SV=2
 2.0E-53 [1..228] [1..228]
gi|54696558, gi|... - gi|61366160|gb|AAX42822.1| CD9 antigen [synthetic construct], gi|54696558|gb|AAV38651.1| CD9 antigen...
 3.0E-53 [1..228] [1..228]
gi|114643018, gi... - gi|114643022|ref|XP_508947.2| PREDICTED: CD9 antigen isoform 5 [Pan troglodytes], gi|114643020|ref|X...
 4.0E-53 [1..228] [1..228]
gi|15080490 - gi|15080490|gb|AAH11988.1| CD9 molecule [Homo sapiens]
 6.0E-53 [1..228] [1..228]

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Predicted Domain #1
Region A:
Residues: [1-102] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKGGTKCI KYLLFGFNFI FWLAGIAVLA IGLWLRFDSQ TKSIFEQETN NNNSSFYTGV  60
   61 YILIGAGALM MLVGFLGCCG AVQESQCMLG LFFGFLLVIF AI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 1oedC
Description: Acetylcholine receptor protein, delta chain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [103-228] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIAAAIWGYS HKDEVIKEVQ EFYKDTYNKL KTKDEPQRET LKAIHYALNC CGLAGGVEQF  60
   61 ISDICPKKDV LETFTVKSCP DAIKEVFDNK FHIIGAVGIG IAVVMIFGMI FSMILCCAIR 120
  121 RNREMV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1g8qA
Description: CD81 extracellular domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.62531598262239 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle