YRC Public Data Repository - Protein Structure Prediction

Protein:	SCGB2A1
Organism:	Homo sapiens
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCGB2A1.

Description	E-value	Query Range	Subject Range
SG2A2_RAT - Secretoglobin family 2A member 2 OS=Rattus norvegicus GN=Scgb2a2 PE=1 SV=1	5.0E-34	[1..94]	[1..95]
gi\|109105903 - gi\|109105903\|ref\|XP_001118476.1\| PREDICTED: similar to secretoglobin, family 2A, member 1 [Macaca mu...	1.0E-33	[1..91]	[68..158]
gi\|126722998, gi... - gi\|126722998\|ref\|NP_001075564.1\| lipophilin CL2 [Oryctolagus cuniculus], gi\|11993600\|gb\|AAG42806.1\|A... gi\|37182585 - gi\|37182585\|gb\|AAQ89094.1\| KVVM3106 [Homo sapiens]	5.0E-33	[1..90]	[1..90]
gi\|6682330 - gi\|6682330\|emb\|CAB64660.1\| heteroglobin B1 subunit [Mesocricetus auratus]	1.0E-31	[1..91]	[1..92]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLMVLMLA ALLLHCYADS GCKLLEDMVE KTINSDISIP EYKELLQEFI DSDAAAEAMG  60
   61 KFKQCFLNQS HRTLKNFGLM MHTVYDSIWC NMKSN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.19
Match:	1utrA
Description:	Clara cell 17kDa protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits