YRC Public Data Repository - Protein Structure Prediction

Protein:	SNRPEL1
Organism:	Homo sapiens
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNRPEL1.

Description	E-value	Query Range	Subject Range
gi\|94388852 - gi\|94388852\|ref\|XP_919276.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	4.0E-23	[2..90]	[140..226]
gi\|55632867 - gi\|55632867\|ref\|XP_520443.1\| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like 1 [Pan tr...	5.0E-23	[1..92]	[1..92]
gi\|27707378, gi\|... - gi\|62667426\|ref\|XP_341121.2\| PREDICTED: similar to small nuclear ribonucleoprotein E [Rattus norvegi...	1.0E-22	[1..92]	[1..92]
gi\|74005840 - gi\|74005840\|ref\|XP_536093.2\| PREDICTED: similar to small nuclear ribonucleoprotein E [Canis familiar... gi\|109018742 - gi\|109018742\|ref\|XP_001099697.1\| PREDICTED: similar to small nuclear ribonucleoprotein E isoform 2 [... RUXE_BOVIN - Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1 gi\|208967438 - gi\|208967438\|dbj\|BAG73733.1\| small nuclear ribonucleoprotein polypeptide E [synthetic construct] SNRPE - small nuclear ribonucleoprotein polypeptide E HGNC:11161\|MIM:1... - nuclear ribonucleoprotein polypeptide E RUXE_MOUSE - Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1 RUXE_CHICK - Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1 gi\|126306697 - gi\|126306697\|ref\|XP_001364976.1\| PREDICTED: similar to solute carrier family 45, member 3, [Monodelp... gi\|114572016 - gi\|114572016\|ref\|XP_001158544.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] gi\|149058608, gi... - ref\|XP_341121.1\| similar to small nuclear ribonucleoprotein E [Rattus norvegicus], gi\|149058608\|gb\|... tr\|G3HQB7\|G3HQB7... - Small nuclear ribonucleoprotein E OS=Cricetulus griseus GN=I79_013014 PE=4 SV=1	2.0E-22	[1..92]	[1..92]
gi\|73978207 - gi\|73978207\|ref\|XP_539726.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	6.0E-22	[2..90]	[183..269]
gi\|47227397 - gi\|47227397\|emb\|CAF96946.1\| unnamed protein product [Tetraodon nigroviridis]	7.0E-22	[1..92]	[1..92]
RUXE_DANRE - Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3 SV=1	1.0E-21	[1..92]	[1..92]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSGQGQKV QKVMVQPINL IFRYLQNRSQ IQVWLYEQVN MQIEGCIIGF DEYMNLVLDD  60
   61 AEEIHSKTKS RKQLGRIMLK GDNITLLQSV SN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.30103
Match:	1i81A
Description:	Archaeal homoheptameric Sm protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.49177223698264	bayes_pls_golite062009
protein binding	0.625703802792387	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: