YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS12
Organism:	Homo sapiens
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS12.

Description	E-value	Query Range	Subject Range
gi\|109124637, gi... - gi\|109124641\|ref\|XP_001086380.1\| PREDICTED: similar to mitochondrial ribosomal protein S12 precursor...	6.0E-49	[1..138]	[1..138]
gi\|149056449, gi... - gi\|27730973\|ref\|XP_214890.1\| PREDICTED: similar to 28S ribosomal protein S12, mitochondrial precurso...	8.0E-49	[1..138]	[1..138]
sp\|O15235\|RT12_H... - 28S ribosomal protein S12, mitochondrial OS=Homo sapiens GN=MRPS12 PE=1 SV=1 VAR_051820, 28S ribosom... gi\|114677135, gi... - gi\|55649195\|ref\|XP_524259.1\| PREDICTED: mitochondrial ribosomal protein S12 isoform 4 [Pan troglodyt...	2.0E-48	[1..138]	[1..138]
RT12_MOUSE - 28S ribosomal protein S12, mitochondrial OS=Mus musculus GN=Mrps12 PE=2 SV=1	3.0E-47	[1..138]	[1..138]
gi\|92910094, gi\|... - gi\|92910094\|ref\|ZP_01278870.1\| Ribosomal protein S12 [Mycobacterium sp. JLS], gi\|92432182\|gb\|EAS9151... gi\|92438565, gi\|... - gi\|92917301\|ref\|ZP_01285915.1\| Ribosomal protein S12 [Mycobacterium sp. KMS], gi\|92438565\|gb\|EAS9641...	2.0E-46	[16..138]	[121..244]
RT12_PONPY - 28S ribosomal protein S12, mitochondrial precursor - Pongo pygmaeus (Orangutan) RT12_PONAB - 28S ribosomal protein S12, mitochondrial OS=Pongo abelii GN=MRPS12 PE=2 SV=1	4.0E-46	[1..138]	[1..139]
gi\|89359806, gi\|... - gi\|89359806\|ref\|ZP_01197626.1\| Ribosomal protein S12, bacterial and chloroplast form [Xanthobacter a...	8.0E-46	[18..138]	[3..124]
RS12_CHLTE - 30S ribosomal protein S12 OS=Chlorobium tepidum GN=rpsL PE=3 SV=1 RS12_CHLTE - 30S ribosomal protein S12 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) ...	1.0E-45	[30..138]	[1..110]
gi\|108797957, gi... - gi\|108797957\|ref\|YP_638154.1\| ribosomal protein S12 [Mycobacterium sp. MCS], gi\|108768376\|gb\|ABG0709...	1.0E-45	[16..138]	[84..207]
gi\|56313632, gi\|... - gi\|56477589\|ref\|YP_159178.1\| 30S ribosomal protein S12 [Azoarcus sp. EbN1], gi\|56313632\|emb\|CAI08277...	2.0E-45	[27..138]	[10..122]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSGLLHGL NTSLTCGPAL VPRLWATCSM ATLNQMHRLG PPKRPPRKLG PTEGRPQLKG  60
   61 VVLCTFTRKP KKPNSANRKC CRVRLSTGRE AVCFIPGEGH TLQEHQIVLV EGGRTQDLPG 120
  121 VKLTVVRGKY DCGHVQKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	2f4vL
Description:	No description for 2f4vL was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits