YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16549529
Organism:	Homo sapiens
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16549529.

Description	E-value	Query Range	Subject Range
gi\|114674911 - gi\|114674911\|ref\|XP_524071.2\| PREDICTED: solute carrier family 25, member 23 [Pan troglodytes]	7.0E-93	[1..384]	[266..649]
gi\|109123106 - gi\|109123106\|ref\|XP_001088378.1\| PREDICTED: similar to solute carrier family 25 (mitochondrial carri...	8.0E-92	[1..384]	[85..468]
SLC25A23 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	1.0E-91	[1..384]	[85..468]
gi\|109486593, gi... - gi\|62718023\|ref\|XP_217310.3\| PREDICTED: similar to solute carrier family 25 (mitochondrial carrier; ...	8.0E-91	[1..384]	[84..467]
gi\|73987018 - gi\|73987018\|ref\|XP_542138.2\| PREDICTED: similar to solute carrier family 25 (mitochondrial carrier; ...	2.0E-90	[1..384]	[85..468]
SCMC3_MOUSE - Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=1 SV=1	2.0E-90	[1..384]	[84..467]
SCMC2_XENLA - Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1	3.0E-90	[1..384]	[131..514]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHSLDRNQD GHIDVSEIQQ SFRALGISIS LEQAEKILHS MDRDGTMTID WQEWRDHFLL  60
   61 HSLENVEDVL YFWKHSTVLD IGECLTVPDE FSKQEKLT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.30103
Match:	2aaoA
Description:	Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [99-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMWWKQLVAG AVAGAVSRTG TAPLDRLKVF MQVHASKTNR LNILGGLRSM VLEGGIRSLW  60
   61 RGNGINVLKI APESAIKFMA YEQIKRAILG QQETLHVQER FVAGSLAGAT AQTIIYPMEV 120
  121 LKTRLTLRRT GQYKGLLDCA RRILEREGPR AFYRGYLPNV LGIIPYAGID LAVYETLKNW 180
  181 WLQQYSHDSA DPGILVLLAC GTISSTCGQI ASYPLALVRT RMQAQASIEG GPQLSMLGLL 240
  241 RHILSQEGMR GLYRGIAPNF MKVIPAVSIS YVVYENMKQA LGVTSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits