YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUFS6
Organism:	Homo sapiens
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUFS6.

Description	E-value	Query Range	Subject Range
gi\|111661843 - gi\|111661843\|gb\|ABH12167.1\| mitochondrial complex I subunit NDUFS6 [Gorilla gorilla] NDUS6_GORGO - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Gorilla gorilla gorilla GN=N...	1.0E-56	[1..123]	[1..123]
NDUS6_BOVIN - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Bos taurus GN=NDUFS6 PE=1 SV...	3.0E-56	[1..124]	[1..124]
NDUS6_PONPY - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=... NDUS6_PONAB - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo abelii GN=NDUFS6 PE=2 ...	9.0E-56	[1..124]	[1..124]
NDUS6_MOUSE - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 ...	4.0E-53	[1..124]	[1..116]
NDUS6_MACFA - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Macaca fascicularis GN=NDUFS...	8.0E-53	[1..124]	[1..124]
gi\|109080210 - gi\|109080210\|ref\|XP_001105649.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein ...	8.0E-53	[1..124]	[1..124]
gi\|109504524, gi... - gi\|149032791\|gb\|EDL87646.1\| rCG41951, isoform CRA_a [Rattus norvegicus], gi\|109504524\|ref\|XP_0010530...	1.0E-52	[1..124]	[1..116]
gi\|74003113 - gi\|74003113\|ref\|XP_535802.2\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 6, 1...	5.0E-52	[1..124]	[72..195]
gi\|114598870 - gi\|114598870\|ref\|XP_001142587.1\| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (N...	1.0E-51	[1..124]	[1..124]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAMTFCRL LNRCGEAARS LPLGARCFGV RVSPTGEKVT HTGQVYDDKD YRRIRFVGRQ  60
   61 KEVNENFAID LIAEQPVSEV ETRVIACDGG GGALGHPKVY INLDKETKTG TCGYCGLQFR 120
  121 QHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.22
Match:	2jvmA
Description:	No description for 2jvmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits