YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP1B3
Organism:	Homo sapiens
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP1B3.

Description	E-value	Query Range	Subject Range
AT1B3_CAVPO - Sodium/potassium-transporting ATPase subunit beta-3 OS=Cavia porcellus GN=ATP1B3 PE=2 SV=1	0.0	[1..279]	[1..279]
AT1B3_RABIT - Sodium/potassium-transporting ATPase subunit beta-3 OS=Oryctolagus cuniculus GN=ATP1B3 PE=2 SV=1	0.0	[1..279]	[1..279]
AT1B3_RAT - Sodium/potassium-transporting ATPase subunit beta-3 OS=Rattus norvegicus GN=Atp1b3 PE=2 SV=1	0.0	[1..279]	[1..279]
gi\|45360823, gi\|... - gi\|45360823\|ref\|NP_989087.1\| ATPase, Na+/K+ transporting, beta 3 polypeptide [Xenopus (Silurana) tro...	0.0	[1..277]	[1..277]
gi\|80477190, gi\|... - gi\|80477190\|gb\|AAI08484.1\| MGC53714 protein [Xenopus laevis], gi\|28302311\|gb\|AAH46716.1\| MGC53714 pr...	0.0	[1..277]	[1..275]
AT1B3_CHICK - Sodium/potassium-transporting ATPase subunit beta-3 OS=Gallus gallus GN=ATP1B3 PE=2 SV=1	0.0	[1..277]	[1..278]
AT1B3_BOVIN - Sodium/potassium-transporting ATPase subunit beta-3 OS=Bos taurus GN=ATP1B3 PE=2 SV=1	0.0	[1..279]	[1..279]
AT1B3_MOUSE - Sodium/potassium-transporting ATPase subunit beta-3 OS=Mus musculus GN=Atp1b3 PE=1 SV=1	0.0	[1..279]	[1..278]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKNEKKSLN QSLAEWKLFI YNPTTGEFLG RTAKSWGLIL LFYLVFYGFL AALFSFTMWV  60
   61 MLQTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [66-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDEVPKYRDQ IPSPGLMVFP KPVTALEYTF SRSDPTSYAG YIEDLKKFLK PYTLEEQKNL  60
   61 TVCPDGA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [133-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFEQKGPVYV ACQFPISLLQ ACSGMNDPDF GYSQGNPCIL VKMNRIIGLK PEGVPRIDCV  60
   61 SKNEDIPNVA VYPHNGMIDL KYFPYYGKKL HVGYLQPLVA VQVSFAPNNT GKEVTVECKI 120
  121 DGSANLKSQD DRDKFLGRVM FKITARA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits