YRC Public Data Repository - Protein Structure Prediction

Protein:	DUSP11
Organism:	Homo sapiens
Length:	330 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DUSP11.

Description	E-value	Query Range	Subject Range
gi\|114578096 - gi\|114578096\|ref\|XP_515550.2\| PREDICTED: dual specificity phosphatase 11 isoform 3 [Pan troglodytes]	1.0E-68	[1..330]	[48..377]
gi\|12653157 - gi\|12653157\|gb\|AAH00346.1\| Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Homo sap... gi\|123995723, gi... - gi\|123995723\|gb\|ABM85463.1\| dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [synthet...	3.0E-68	[1..330]	[1..330]
gi\|54696108, gi\|... - gi\|61365528\|gb\|AAX42722.1\| dual specificity phosphatase 11 [synthetic construct], gi\|54696108\|gb\|AAV...	7.0E-68	[1..330]	[1..330]

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Predicted Domain #1

Region A:
Residues: [1-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQWHHPRSG WGRRRDFSGR SSAKKKGGNH IPERWKDYLP VGQRMPGTRF IAFKVPLQKS  60
   61 FEKKLAPEEC FSPLDLFNKI REQNEELGLI IDLTYTQRYY KPEDLPETVP YLKIFTVGHQ 120
  121 VPDDETIFKF KHAVNGFLKE NKDNDKLIGV HCTHGLNRTG YLICRYLIDV EGVRPDDAIE 180
  181 LFNRCRGHCL ERQNYIEDLQ NGPIRKNWNS SVPRSSDFED SAHLMQPVHN KPVKQGPRYN 240
  241 LHQIQGHSAP RHFHTQTQSL QQSVRKFSEN PHVYQRHHLP PPGPPGEDYS HRRYSWNVKP 300
  301 NASRAAQDRR RWYPYNYSRL SYPACWEWTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	2fh7A
Description:	Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits