YRC Public Data Repository - Protein Structure Prediction

Protein:	NPFF
Organism:	Homo sapiens
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPFF.

Description	E-value	Query Range	Subject Range
NPFF_RAT - Pro-FMRFamide-related neuropeptide FF OS=Rattus norvegicus GN=Npff PE=3 SV=1	1.0E-40	[1..113]	[1..114]
gi\|114644472 - gi\|114644472\|ref\|XP_001138078.1\| PREDICTED: neuropeptide FF-amide peptide isoform 1 [Pan troglodytes...	2.0E-39	[1..113]	[1..113]
NPFF_MOUSE - Pro-FMRFamide-related neuropeptide FF OS=Mus musculus GN=Npff PE=3 SV=1	3.0E-39	[1..113]	[1..114]
NPFF_BOVIN - Pro-FMRFamide-related neuropeptide FF OS=Bos taurus GN=NPFF PE=3 SV=1	4.0E-39	[16..113]	[17..115]
gi\|109096952 - gi\|109096952\|ref\|XP_001106733.1\| PREDICTED: similar to neuropeptide FF-amide peptide precursor isofo...	3.0E-38	[1..113]	[1..113]
gi\|119617127, gi... - gi\|74355310\|gb\|AAI04235.1\| NPFF protein [Homo sapiens], gi\|74353786\|gb\|AAI04236.1\| NPFF protein [Hom...	1.0E-32	[24..113]	[27..116]
gi\|114052450, gi... - gi\|116078056\|dbj\|BAF34891.1\| neuropeptide NPFF [Danio rerio], gi\|114052450\|ref\|NP_899189.2\| neuropep...	5.0E-22	[52..113]	[66..128]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRQAAALL VLLLLIDGGC AEGPGGQQED QLSAEEDSEP LPPQDAQTSG SLLHYLLQAM  60
   61 ERPGRSQAFL FQPQRFGRNT QGSWRNEWLS PRAGEGLNSQ FWSLAAPQRF GKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits