YRC Public Data Repository - Protein Structure Prediction

Protein:	AGPAT9
Organism:	Homo sapiens
Length:	434 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGPAT9.

Description	E-value	Query Range	Subject Range
GPAT3_RAT - Glycerol-3-phosphate acyltransferase 3 OS=Rattus norvegicus GN=Gpat3 PE=1 SV=1	0.0	[1..434]	[1..434]
gi\|114593872, gi... - gi\|114593878\|ref\|XP_001134987.1\| PREDICTED: similar to Lysophosphatidic acid acyltransferase theta i...	0.0	[1..434]	[1..434]
gi\|62898818 - gi\|62898818\|dbj\|BAD97263.1\| hypothetical protein MGC11324 variant [Homo sapiens]	0.0	[1..434]	[1..434]
GPAT3_MOUSE - Glycerol-3-phosphate acyltransferase 3 OS=Mus musculus GN=Gpat3 PE=1 SV=1	0.0	[1..434]	[1..434]
gi\|74002146 - gi\|74002146\|ref\|XP_535637.2\| PREDICTED: similar to CG3209-PB, isoform B [Canis familiaris]	0.0	[1..433]	[78..510]
gi\|50806268 - gi\|50806268\|ref\|XP_424400.1\| PREDICTED: hypothetical protein [Gallus gallus]	0.0	[4..430]	[12..448]
gi\|55731819 - gi\|55731819\|emb\|CAH92613.1\| hypothetical protein [Pongo abelii] gi\|197097750 - gi\|197097750\|ref\|NP_001126531.1\| lysophosphatidic acid acyltransferase zeta [Pongo abelii]	4.0E-99	[4..430]	[21..458]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGAELAGKI LSTWLTLVLG FILLPSVFGV SLGISEIYMK ILVKTLEWAT IRIEKGTPKE  60
   61 SILKNSASVG IIQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [74-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDESPMEKGL SGLRGRDFEL SDVFYFSKKG LEAIVEDEVT QRFSSEELVS WNLLTRTNVN  60
   61 FQYISLRLTM VWVLGVIVRY CVLLPLRVTL AFIGISLLVI GTTLVGQLPD SSLKNWLSEL 120
  121 VHLTCCRICV RALSGTIHYH NKQYRPQKGG ICVANHTSPI DVLILTTDGC YAMVGQVHGG 180
  181 LMGIIQRAMV KACPHVWFER SEMKDRHLVT KRLKEHIADK KKLPILIFPE GTCINNTSVM 240
  241 MFKKGSFEIG GTIHPVAIKY NPQFGDAFWN SSKYNMVSYL LRMMTSWAIV CDVWYMPPMT 300
  301 REEGEDAVQF ANRVKSAIAI QGGLTELPWD GGLKRAKVKD IFKEEQQKNY SKMIVGNGSL 360
  361 S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.21
Match:	1k30A
Description:	Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits