YRC Public Data Repository - Protein Structure Prediction

Protein:	TMEM56
Organism:	Homo sapiens
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMEM56.

Description	E-value	Query Range	Subject Range
gi\|109016494 - gi\|109016494\|ref\|XP_001106777.1\| PREDICTED: similar to LAG1 longevity assurance homolog 2 isoform 1 ...	5.0E-48	[24..255]	[387..616]
gi\|85116500 - gi\|85116500\|ref\|XP_965062.1\| hypothetical protein NCU02468 [Neurospora crassa OR74A] gi\|28926864, gi\|... - gi\|38567119\|emb\|CAE76415.1\| related to protein LAC1 [Neurospora crassa], gi\|32422447\|ref\|XP_331667.1...	5.0E-48	[2..247]	[140..420]
TMM56_MOUSE - Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1	2.0E-47	[1..263]	[14..276]
gi\|116193995, gi... - gi\|88182628\|gb\|EAQ90096.1\| hypothetical protein CHGG_06715 [Chaetomium globosum CBS 148.51], gi\|1161...	8.0E-47	[3..255]	[283..574]
gi\|109467499, gi... - ref\|XP_345285.1\| similar to RIKEN cDNA C730036B01 [Rattus norvegicus], gi\|209529652\|ref\|NP_001129351...	6.0E-46	[1..263]	[1..263]
gi\|114557795, gi... - gi\|114557799\|ref\|XP_001157220.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114...	7.0E-46	[1..263]	[1..263]
gi\|42554572, gi\|... - gi\|46135815\|ref\|XP_389599.1\| hypothetical protein FG09423.1 [Gibberella zeae PH-1], gi\|42554572\|gb\|E...	3.0E-45	[2..255]	[163..449]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEINTKLLIS VTCISFFTFQ LLFYFVSYWF SAKVSPGFNS LSFKKKIEWN SRVVSTCHSL  60
   61 VVGIFGLYIF LFDEATKADP LWGGPSLANV NIAIASGYLI SDLSIIILYW KVI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDKFFIMHHC ASLYAYYLVL KNGVLAYIGN FRLLAELSSP FVNQRWFFEA LKYPKFSKAI  60
   61 VINGILMTVV FFIVRIASML PHYGFMYSVY GTEPYIRLGV LIQLSWVISC VVLDVMNVMW 120
  121 MIKISKGCIK VISHIRQEKA KNSLQNGKLD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits