YRC Public Data Repository - Protein Structure Prediction

Protein:	MBF1
Organism:	Saccharomyces cerevisiae
Length:	151 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBF1.

Description	E-value	Query Range	Subject Range
MBF1_DEBHA - Multiprotein-bridging factor 1 OS=Debaryomyces hansenii GN=MBF1 PE=3 SV=1 MBF1_DEBHA - Multiprotein-bridging factor 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NB...	137.0	[0..1]	[150..1]
MBF1_ASHGO - Multiprotein-bridging factor 1 OS=Ashbya gossypii GN=MBF1 PE=3 SV=1 MBF1_ASHGO - Multiprotein-bridging factor 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL...	136.0	[0..2]	[151..3]
MBF1_CANGA - Multiprotein-bridging factor 1 OS=Candida glabrata GN=MBF1 PE=3 SV=1 MBF1_CANGA - Multiprotein-bridging factor 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 062...	133.0	[0..1]	[151..1]
gi\|50312323, gi\|... - gi\|50312323\|ref\|XP_456195.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645331\|emb\|CAG9890...	130.0	[0..1]	[150..48]
MBF1_YARLI - Putative multi-protein-binding factor 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MBF1 PE=... MBF1_YARLI - Putative multi-protein-binding factor 1 OS=Yarrowia lipolytica GN=MBF1 PE=3 SV=1	128.0	[0..2]	[151..3]
MBF1_KLULA - Multiprotein-bridging factor 1 OS=Kluyveromyces lactis GN=MBF1 PE=3 SV=2 MBF1_KLULA - Multiprotein-bridging factor 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NB...	127.0	[0..1]	[150..1]
SPBC83.17 - transcriptional coactivator, multiprotein bridging factor Mbf1 MBF1_SCHPO - Multiprotein-bridging factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mbf1 PE=3 S...	125.0	[0..1]	[151..1]
MBF1_CANAL - Multiprotein-bridging factor 1 OS=Candida albicans GN=MBF1 PE=3 SV=1 gi\|238879398 - gi\|238879398\|gb\|EEQ43036.1\| multiprotein-bridging factor 1 [Candida albicans WO-1] MBF1_CANAL - Multiprotein-bridging factor 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MBF1 PE=3 SV=1	124.0	[0..2]	[150..3]
gi\|109109703 - gi\|109109703\|ref\|XP_001092659.1\| PREDICTED: similar to endothelial differentiation-related factor 1 ...	124.0	[0..2]	[133..4]
gi\|54641337, gi\|... - gi\|54641337\|gb\|EAL30087.1\| GA17985 [Drosophila pseudoobscura pseudoobscura], gi\|125977112\|ref\|XP_001... gi\|54641337\|gb\|E... - GA17985-PA [Drosophila pseudoobscura], GA17985 [Drosophila pseudoobscura pseudoobscura] gi\|195168135, gi... - gi\|195168135\|ref\|XP_002024887.1\| GL17867 [Drosophila persimilis], gi\|194108317\|gb\|EDW30360.1\| GL1786...	123.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDWDTNTII GSRARAGGSG PRANVARSQG QINAARRQGL VVSVDKKYGS T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.535	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.535	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.402	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.402	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.350	N/A	N/A	a.182.1	GatB/YqeY domain
View	Download	0.348	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.348	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.337	N/A	N/A	a.157.1	Skp1 dimerisation domain-like
View	Download	0.337	N/A	N/A	a.157.1	Skp1 dimerisation domain-like
View	Download	0.288	N/A	N/A	d.52.3	Prokaryotic type KH domain (KH-domain type II)

Predicted Domain #2

Region A:
Residues: [52-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTRGDNEGQR LTKVDRETDI VKPKKLDPNV GRAISRARTD KKMSQKDLAT KINEKPTVVN  60
   61 DYEAARAIPN QQVLSKLERA LGVKLRGNNI GSPLGAPKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.30103
Match:	1lliA
Description:	lambda C1 repressor, DNA-binding domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits