YRC Public Data Repository - Protein Structure Prediction

Protein:	NYV1
Organism:	Saccharomyces cerevisiae
Length:	251 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NYV1.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-71	[1..251]	[1..251]
NYV1_YEAST - Vacuolar v-SNARE NYV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NYV1 PE=1 SV=2 NYV1 - v-SNARE component of the vacuolar SNARE complex involved in vesicle fusion; inhibits ATP-dependent C...	1.0E-69	[4..251]	[6..253]
VA713_ARATH - Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1	8.0E-44	[43..247]	[3..209]
SC22B_RAT - Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3 tr\|G3HP80\|G3HP80... - Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=I79_012586 PE=4 SV=1 SEC22B - SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) gi\|109014715 - gi\|109014715\|ref\|XP_001114286.1\| PREDICTED: similar to SEC22 vesicle trafficking protein-like 1 [Mac... SC22B_MOUSE - Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3 SC22B_PONAB - Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3 SC22B_PONPY - Vesicle-trafficking protein SEC22b - Pongo pygmaeus (Orangutan) ENSCJAT00000039187 - null gi\|123998251, gi... - gi\|123998251\|gb\|ABM86727.1\| SEC22 vesicle trafficking protein homolog B (S. cerevisiae) [synthetic c... ENSOCUP000000159... - pep:novel chromosome:oryCun2:13:44273276:44295283:-1 gene:ENSOCUG00000026877 transcript:ENSOCUT00000...	4.0E-41	[31..251]	[19..214]
SC22B_CRIGR - Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3	1.0E-40	[31..251]	[19..214]
gi\|14290512 - gi\|14290512\|gb\|AAH09024.1\| SEC22 vesicle trafficking protein homolog B (S. cerevisiae) [Mus musculus...	3.0E-40	[31..251]	[19..214]
sec22 - SNARE Sec22 SEC22_SCHPO - Protein transport protein sec22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec22 PE=2...	2.0E-39	[33..251]	[13..205]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLVSYVEVI KNGETISSCF QPFQKNENYG TITSANEQIT PVIFHNLIMD MVLPKVVPIK  60
   61 GNKVTKMSMN LIDGFDCFYS TDDHDPKTVY VCFTLVDMPK ILPIRILSGL QEYESNATNE 120
  121 LLSSHVGQIL DSFHEELVEY RNQTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1ifqA_
Description:	Sec22b
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [146-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSGNGQSSN GNGQNTISDI GDATEDQIKD VIQIMNDNID KFLERQERVS LLVDKTSQLN  60
   61 SSSNKFRRKA VNIKEIMWWQ KVKNITLLTF TIILFVSAAF MFFYLW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.66807
Match:	1sfcA_
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits