YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|417718
Organism:	Saccharomyces cerevisiae
Length:	76 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|417718.

Description	E-value	Query Range	Subject Range
gi\|22004048 - gi\|22004048\|dbj\|BAC06474.1\| ubiquitin [Ciona savignyi]	132.0	[0..8]	[74..84]
gi\|109507978, gi... - gi\|109508640\|ref\|XP_001071452.1\| PREDICTED: similar to ribosomal protein S27a [Rattus norvegicus], g...	129.0	[0..1]	[75..76]
gi\|115313788 - gi\|115313788\|gb\|AAI24185.1\| Zgc:152944 [Danio rerio]	127.0	[0..8]	[75..510]
gi\|73970166 - gi\|73970166\|ref\|XP_531829.2\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [C...	123.0	[0..8]	[75..156]
gi\|82902501, gi\|... - gi\|82902501\|ref\|XP_930453.1\| PREDICTED: similar to ubiquitin/40S ribosomal protein S27a fusion prote...	123.0	[0..1]	[75..76]
gi\|114577583 - gi\|114577583\|ref\|XP_001147989.1\| PREDICTED: similar to RPS27A protein [Pan troglodytes]	123.0	[0..8]	[75..163]
gi\|49076462, gi\|... - gi\|71021009\|ref\|XP_760735.1\| hypothetical protein UM04588.1 [Ustilago maydis 521], ref\|XP_402203.1\| ...	122.0	[0..8]	[75..84]
gi\|46138853, gi\|... - gi\|46138853\|ref\|XP_391117.1\| hypothetical protein FG10941.1 [Gibberella zeae PH-1], gi\|42551382\|gb\|E...	120.0	[0..1]	[75..78]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKKRKKKVYT TPKKIKHKHK KVKLAVLSYY KVDAEGKVTK LRRECSNPTC GAGVFLANHK  60
   61 DRLYCGKCHS VYKVNA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits