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View Structure Prediction Details

Protein: RPL20A
Organism: Saccharomyces cerevisiae
Length: 178 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL20A.

Description E-value Query
Range		 Subject
Range
ENSCJAT00000027218 - null
RL18A_BOVIN - 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1
gi|90081908 - gi|90081908|dbj|BAE90235.1| unnamed protein product [Macaca fascicularis]
RPL18A - ribosomal protein L18a
 1.0E-76 [8..178] [5..176]
gi|27769162 - gi|27769162|gb|AAH42256.1| RPL18A protein [Xenopus laevis]
 7.0E-74 [8..178] [7..178]
RL18A_DANRE - 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1
 3.0E-73 [8..178] [5..176]
gi|37779046 - gi|37779046|gb|AAP20183.1| ribosomal protein L18a [Pagrus major]
 7.0E-73 [8..178] [12..183]
RL18A_ICTPU - 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1
 8.0E-72 [8..178] [5..176]
RL18A_SALSA - 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1
 1.0E-71 [8..178] [5..176]
RPL20A - Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Bp and has similari...
gi|190408468 - gi|190408468|gb|EDV11733.1| ribosomal protein L20A [Saccharomyces cerevisiae RM11-1a]
gi|151945947 - gi|151945947|gb|EDN64179.1| ribosomal protein L20A [Saccharomyces cerevisiae YJM789]
 5.0E-71 [1..178] [1..178]
gi|28189583 - gi|28189583|dbj|BAC56406.1| similar to ribosomal protein L18a [Bos taurus]
 6.0E-71 [8..162] [5..158]

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Predicted Domain #1
Region A:
Residues: [1-178] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQKWKMAHF KEYQVIGRRL PTESVPEPKL FRMRIFASNE VIAKSRYWYF LQKLHKVKKA  60
   61 SGEIVSINQI NEAHPTKVKN FGVWVRYDSR SGTHNMYKEI RDVSRVAAVE TLYQDMAARH 120
  121 RARFRSIHIL KVAEIEKTAD VKRQYVKQFL TKDLKFPLPH RVQKSTKTFS YKRPSTFY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 132.677781
Match: PF01775.6
Description: No description for PF01775.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle