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View Structure Prediction Details

Protein: SPG5
Organism: Saccharomyces cerevisiae
Length: 373 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPG5.

Description E-value Query
Range
Subject
Range
SPG5 - Protein required for survival at high temperature during stationary phase; not required for growth o...
766.0 [0..1] [373..86]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGGNNWSM WLRMSRVHLR QITKSLDRTL ISLSHGNFSH QYNRNIFVTW WKSLFEASTA  60
   61 FRRASGLTVS PLTRRGIARF DHFRPVPNVS KFASFPRVPK GAPRGLFTNW NMTTSKRLLG 120
  121 QRAYSTSSIK FTQEAVNNMT ISLRCFFNSL GGLNQCSHSN SCKAY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [166-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNASNVTSKQ DHVQPVALKK LSQKDINFIR NLELFKIMKT QNEVVDETSA YYMEKPGSYI  60
   61 EFTISEFNVN GTFSAPLSFL DPSLLADLDE MIRNYKYELK SIYSSVDMIL QNYGSLPITF 120
  121 HRNKIRIHFP NSTVVETEKL IAGLNIATGV IYADTSPDIS LEGTNLNALV NVDNSGSVWS 180
  181 FVKEPSFPSR SAFSPILSDA SYDTYELV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle