YRC Public Data Repository - Protein Structure Prediction

Protein:	TSR2
Organism:	Saccharomyces cerevisiae
Length:	205 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSR2.

Description	E-value	Query Range	Subject Range
TSR2 - Protein with a potential role in pre-rRNA processing TSR2_YEAST - Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR2 PE...	1.0E-61	[1..205]	[1..205]
gi\|44983704 - gi\|44983704\|gb\|AAS52803.1\| AER119Wp [Ashbya gossypii ATCC 10895] gi\|45190725, gi\|... - gi\|45190725\|ref\|NP_984979.1\| AER119Wp [Ashbya gossypii ATCC 10895], gi\|44983704\|gb\|AAS52803.1\| AER11...	2.0E-61	[3..205]	[2..205]
orf19.10515, orf... - orf19.2998 CGDID:CAL0006160 Assembly 19, Contig19-10163 (141690, 141061) CDS, reverse complemented, ... gi\|68469419, gi\|... - gi\|68469419\|ref\|XP_721224.1\| hypothetical protein CaO19.10515 [Candida albicans SC5314], gi\|68468875...	9.0E-54	[1..204]	[1..209]
TSR2_MOUSE - Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus GN=Tsr2 PE=1 SV=1	4.0E-44	[26..201]	[6..191]
TSR2 - TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	3.0E-43	[26..201]	[6..191]
gi\|71019589, gi\|... - gi\|71019589\|ref\|XP_760025.1\| hypothetical protein UM03878.1 [Ustilago maydis 521], ref\|XP_401493.1\| ...	1.0E-42	[28..202]	[23..222]
gi\|46128735, gi\|... - gi\|46128735\|ref\|XP_388921.1\| hypothetical protein FG08745.1 [Gibberella zeae PH-1], gi\|42549599\|gb\|E...	2.0E-42	[27..202]	[103..293]
gi\|37681785 - gi\|37681785\|gb\|AAQ97770.1\| hypothetical protein DT1P1A10 [Danio rerio]	4.0E-40	[32..201]	[12..182]
gi\|85085682 - gi\|85085682\|ref\|XP_957546.1\| hypothetical protein NCU03907 [Neurospora crassa OR74A] gi\|7899394, gi\|3... - gi\|7899394\|emb\|CAB91684.1\| conserved hypothetical protein [Neurospora crassa], gi\|32405226\|ref\|XP_32...	5.0E-40	[29..203]	[10..217]

Back

Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQYIDETA FVQAEQGKTN LMFSDEKQQA RFELGVSMVI YKWDALDVAV ENSWGGPDSA  60
   61 EKRDWITGIV VDLFKNEKVV DAALIEETLL YAMIDEFETN VEDDSALPIA VEVINIYNDC 120
  121 FNLNYNKVEK LYLEWQEKQR TKKSKRVVHI EGDDDEDDED VEDYDDEDED EEMDEVVPDL 180
  181 VSSKPEPIVD EDGFELVQPK GRRKH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits