YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL13
Organism:	Saccharomyces cerevisiae
Length:	264 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL13.

Description	E-value	Query Range	Subject Range
MRPL13 - Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation gi\|207343433 - gi\|207343433\|gb\|EDZ70893.1\| YKR006Cp-like protein [Saccharomyces cerevisiae AWRI1631]	461.0	[0..1]	[264..12]
gi\|44983213 - gi\|44983213\|gb\|AAS52395.1\| AEL289Wp [Ashbya gossypii ATCC 10895] gi\|44983213, gi\|... - gi\|45190317\|ref\|NP_984571.1\| AEL289Wp [Ashbya gossypii ATCC 10895], gi\|44983213\|gb\|AAS52395.1\| AEL28...	349.0	[0..28]	[263..13]
gi\|49640258 - gi\|49640258\|emb\|CAH02715.1\| KLLA0A02915p [Kluyveromyces lactis] gi\|49640258, gi\|... - gi\|50302385\|ref\|XP_451127.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640258\|emb\|CAH0271...	195.0	[0..25]	[262..12]
gi\|49528180, gi\|... - gi\|50292869\|ref\|XP_448867.1\| unnamed protein product [Candida glabrata], gi\|49528180\|emb\|CAG61837.1\|... gi\|49528180 - gi\|49528180\|emb\|CAG61837.1\| unnamed protein product [Candida glabrata]	178.0	[0..21]	[264..4]
gi\|49648999 - gi\|49648999\|emb\|CAG81329.1\| YALI0D21934p [Yarrowia lipolytica] gi\|49648999, gi\|... - gi\|50551315\|ref\|XP_503131.1\| YALI0D21934p [Yarrowia lipolytica], gi\|49648999\|emb\|CAG81329.1\| unnamed...	65.0	[0..24]	[259..22]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLLKLHCI RPLPQRSVWL SGYKQKARCI HSSAANGDFM SWFKRKKQEE HQEPVKDTKQ  60
   61 LIKDIEEGTN EASSQSSSNN KNRLELIPEN FIGEGSRRCK RQKELKLAVS SAPFNQWLSR 120
  121 DKI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSDNQLDDMI LQATEKTLGK VDQDVQFSDL VAKFQFTKFL QSKSGYLIPD YELTTLSTPL  60
   61 QFKRYIKEKI LPSANDPKLA YKEAEPNAIH PFSDNYASPN IYVVNDVTSK EQKSKYDTIM 120
  121 KEIQKLEDDA TRKALETARS A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits