YRC Public Data Repository - Protein Structure Prediction

Protein:	ECM9
Organism:	Saccharomyces cerevisiae
Length:	377 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECM9.

Description	E-value	Query Range	Subject Range
ECM9 - Non-essential protein of unknown function gi\|207343431 - gi\|207343431\|gb\|EDZ70891.1\| YKR004Cp-like protein [Saccharomyces cerevisiae AWRI1631]	303.0	[0..86]	[377..1]
gi\|44983214 - gi\|44983214\|gb\|AAS52396.1\| AEL288Wp [Ashbya gossypii ATCC 10895] gi\|44983214, gi\|... - gi\|45190318\|ref\|NP_984572.1\| AEL288Wp [Ashbya gossypii ATCC 10895], gi\|44983214\|gb\|AAS52396.1\| AEL28...	257.0	[0..4]	[341..2]
gi\|32404642, gi\|... - gi\|32404642\|ref\|XP_322934.1\| related to geranylgeranyltransferase type I alpha subunit (RAM2) [MIPS]... gi\|85102575 - gi\|85102575\|ref\|XP_961359.1\| related to geranylgeranyltransferase type I alpha subunit (RAM2) [MIPS]...	249.0	[0..7]	[282..189]
gi\|50761908 - gi\|50761908\|ref\|XP_424881.1\| PREDICTED: similar to Protein farnesyltransferase/geranylgeranyltransfe...	249.0	[0..18]	[325..240]
gi\|109083012 - gi\|109083012\|ref\|XP_001104317.1\| PREDICTED: similar to Rab geranylgeranyltransferase, alpha subunit ...	249.0	[0..8]	[337..29]
FNTA_SOLLC - Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum G...	249.0	[0..10]	[288..5]
gi\|46123067, gi\|... - gi\|46123067\|ref\|XP_386087.1\| hypothetical protein FG05911.1 [Gibberella zeae PH-1], gi\|42552713\|gb\|E...	247.0	[0..7]	[278..183]
gi\|145013478, gi... - gi\|39978125\|ref\|XP_370450.1\| hypothetical protein MGG_06947 [Magnaporthe grisea 70-15], gb\|EAA55290....	247.0	[0..7]	[282..171]
gi\|114652465 - gi\|114652465\|ref\|XP_509870.2\| PREDICTED: Rab geranylgeranyltransferase, alpha subunit [Pan troglodyt...	245.0	[0..31]	[337..51]
FNTA_BOVIN - Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=...	244.0	[0..18]	[284..62]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSLPLCRE FFEKITAYLD YHDFRLTITA NQPSITLPYY VDEKAHSIEL IIFKTTFLSL  60
   61 FQEAHTYFNK TFSDQSGISN ENIYYMTVGF LLTTPENKTV YNVHEDLLKR YFQDNSVLVI 120
  121 PDLLVKEVRL IQRLLCSSNN RINKSSSLWI LYRKLFVLSL DANTLVLPDI LFVFHSSGSQ 180
  181 HFSNYYCWNT ARWFYDNLPY NKRIELFNLT KRFCFQNVKD CSSWSALAYM VCQQEEKKTD 240
  241 NIRDFQRLTS SFNVPFKINK VDLNFQVQPA DAFTQELVKW IDRTYAADW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.522879
Match:	2f0yA
Description:	No description for 2f0yA was found.

Predicted Domain #2

Region A:
Residues: [290-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPYLCLLQIT KFNITLRIEM DSVLLTWRNE ILNFEENSGH IKMINNTPIV PEKFSNDLLT  60
   61 SVNFAHFGYK KLFLNKFLDK NKKEQSDS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.806	d.223.1	Polo domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits