YRC Public Data Repository - Protein Structure Prediction

Protein:	YJL016W
Organism:	Saccharomyces cerevisiae
Length:	561 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL016W.

Description	E-value	Query Range	Subject Range
orf19.13221, orf... - orf19.5799 CGDID:CAL0001560 Assembly 19, Contig19-10234 (38939, 40999) CDS, translated using codon t... gi\|68481402, gi\|... - gi\|68481533\|ref\|XP_715275.1\| possible CCR4-NOT complex associated factor Caf120p fragment [Candida a...	451.0	[0..6]	[447..141]
gi\|44986343, gi\|... - gi\|45201409\|ref\|NP_986979.1\| AGR313Wp [Ashbya gossypii ATCC 10895], gi\|44986343\|gb\|AAS54803.1\| AGR31... gi\|44986343 - gi\|44986343\|gb\|AAS54803.1\| AGR313Wp [Ashbya gossypii ATCC 10895]	434.0	[0..51]	[448..41]
YJL017W - YJL017W SGDID:S0003554, Chr X from 405284-406261	423.0	[0..1]	[322..1]
gi\|85116853 - gi\|85116853\|ref\|XP_965135.1\| hypothetical protein NCU02750 [Neurospora crassa OR74A] gi\|32423023, gi\|... - gi\|32423023\|ref\|XP_331949.1\| hypothetical protein [Neurospora crassa], gi\|28926938\|gb\|EAA35899.1\| co...	393.0	[0..3]	[446..74]
gi\|39945618, gi\|... - gi\|39945618\|ref\|XP_362346.1\| hypothetical protein MG04791.4 [Magnaporthe grisea 70-15], gb\|EAA51032....	384.0	[0..12]	[446..115]
gi\|71019721, gi\|... - gi\|71019721\|ref\|XP_760091.1\| hypothetical protein UM03944.1 [Ustilago maydis 521], ref\|XP_401559.1\| ...	380.0	[0..22]	[446..171]
gi\|49655573, gi\|... - gi\|50422657\|ref\|XP_459905.1\| hypothetical protein DEHA0E14355g [Debaryomyces hansenii CBS767], gi\|49...	356.0	[0..15]	[447..36]
gi\|88183399, gi\|... - gi\|88183399\|gb\|EAQ90867.1\| hypothetical protein CHGG_02802 [Chaetomium globosum CBS 148.51], gi\|1162...	354.0	[0..11]	[446..2]
gi\|42545940, gi\|... - gi\|46106734\|ref\|XP_380610.1\| hypothetical protein FG00434.1 [Gibberella zeae PH-1], gi\|42545940\|gb\|E...	351.0	[0..36]	[446..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGILDSLKKP VNIKSSLPKF SRSATSINLS SHPVSSRSFL ELPPELFSIT KPIFKLLQAH  60
   61 ANKIYFQSSD AEAVWNVKDS SGHVFEAESI SLLGSHIIIT NSSVQVADVA IIDSPSNINQ 120
  121 CEISSVGEFL QF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.823	d.93.1	SH2 domain

Predicted Domain #2

Region A:
Residues: [133-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNGQLSITCN DFGLLEKFKR LCMISIFEFI SIYKALTGTV ISSYGLRMSD MHIILNSPFN  60
   61 FKDWCEVYLD GQGWVKVWCH IDKVSKTNNS KSSSDNDAKG KYQIRFYRDD KSTSSKNCVF 120
  121 FIPDNEYVQD IFFYNINAAE PSKNMNDFFQ GLQMIKLVGN VRF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [296-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSDTDFNDVV DSGSIYSSAN NGSGDSSSTA LNNESPNTTP KSRTFFSPKG HRRNSSHVSS  60
   61 LTSRSTKKPI TNFTTRTNGL LIRPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [381-561]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHHGVHHLEA MIRFIIPLMD CARLYGRPVQ FKTERTDINS LMFGLPKLPS VDYFAEEEIA  60
   61 HLMTQEFNPL KEKDTDDTMA LTMSRFSSYL QERMTKVSKR NTELNFRTFS DVMGMYNTTR 120
  121 DHSKLNCMSD KDNSVKEFSL SDKSNVSSET TNMMNQLQVN AHEYKSSMCE RPIVASTSPI 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits