YRC Public Data Repository - Protein Structure Prediction

Protein:	LST7
Organism:	Saccharomyces cerevisiae
Length:	242 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LST7.

Description	E-value	Query Range	Subject Range
gi\|151943337 - gi\|151943337\|gb\|EDN61650.1\| lethal with sec13 [Saccharomyces cerevisiae YJM789] LST7 - Protein possibly involved in a post-Golgi secretory pathway; required for the transport of nitrogen-... gi\|190406920 - gi\|190406920\|gb\|EDV10187.1\| hypothetical protein SCRG_00957 [Saccharomyces cerevisiae RM11-1a] LST7_YEAST - Protein LST7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LST7 PE=1 SV=2	5.0E-82	[1..242]	[1..242]
gi\|44980881, gi\|... - gi\|45185223\|ref\|NP_982940.1\| ABL007Wp [Ashbya gossypii ATCC 10895], gi\|44980881\|gb\|AAS50764.1\| ABL00... gi\|44980881 - gi\|44980881\|gb\|AAS50764.1\| ABL007Wp [Ashbya gossypii ATCC 10895]	8.0E-81	[1..232]	[1..233]
FLCN_RAT - Folliculin OS=Rattus norvegicus GN=Flcn PE=1 SV=1	1.0E-73	[3..232]	[2..262]
FLCN - folliculin	1.0E-71	[3..232]	[2..262]
FLCN_MOUSE - Folliculin OS=Mus musculus GN=Flcn PE=1 SV=1	2.0E-71	[3..232]	[2..262]
gi\|76573642 - gi\|76573642\|dbj\|BAE44726.1\| hypothetical protein [Candida albicans] gi\|68470143, gi\|... - gi\|77022770\|ref\|XP_888829.1\| hypothetical protein CaO19_6508 [Candida albicans SC5314], gi\|68470143\|...	3.0E-64	[1..225]	[1..258]
BHD-PA - The gene Birt-Hogg-Dube homolog is referred to in FlyBase by the symbol Dmel\BHD (CG8616, FBgn026111... gi\|220956190, gi... - gi\|220956190\|gb\|ACL90638.1\| CG8616-PA [synthetic construct], gi\|220946524\|gb\|ACL85805.1\| CG8616-PA [...	6.0E-60	[3..232]	[2..219]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTVISLAH FCDKHGPRII SVTQSAEKGT LGEELLVPDY PTESYCESCL LQFPEESTRS  60
   61 MRCFIEDVPF ITTQYSSIRY QLLNSIIKRA FSEETMIYDN MP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [103-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIFFDDLRGL NLVIGFKLYD ENARGNERRY CFILTVDSRS HDDSMKMLSE HWNFIIGGFD  60
   61 KMIAYIKNIH KSEFLGKNKT VENNLETLNN NAFIGSYLRA NKSKFGRNLV SLTDDKFLFV 120
  121 RIHKWNSFLL HTVMNENKLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits