| Protein: | STP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 519 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP1.
| Description | E-value | Query Range |
Subject Range |
|
|
374.0 | [0..4] | [395..2501] |
|
|
328.0 | [0..6] | [461..249] |
|
|
322.0 | [0..3] | [403..458] |
|
|
319.0 | [0..4] | [460..734] |
|
|
314.0 | [0..4] | [425..452] |
|
Region A: Residues: [1-219] |
1 11 21 31 41 51
| | | | | |
1 MPSTTLLFPQ KHIRAIPGKI YAFFRELVSG VIISKPDLSH HYSCENATKE EGKDAADEEK 60
61 TTTSLFPESN NIDRSLNGGC SVIPCSMDVS DLNTPISITL SPENRIKSEV NAKSLLGSRP 120
121 EQDTGAPIKM STGVTSSPLS PSGSTPEHST KVLNNGEEEF ICHYCDATFR IRGYLTRHIK 180
181 KHAIEKAYHC PFFNSATPPD LRCHNSGGFS RRDTYKTHL
|
| Detection Method: |  |
| Confidence: | 9.69897 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [220-404] |
1 11 21 31 41 51
| | | | | |
1 KARHVLYPKG VKPQDRNKSS GHCAQCGEYF STIENFVENH IESGDCKALP QGYTKKNEKR 60
61 SGKLRKIKTS NGHSRFISTS QSVVEPKVLF NKDAVEAMTI VANNSSGNDI ISKYGNNKLM 120
121 LNSENFKVDI PKRKRKYIKK KQQQVSGSTV TTPEVATQNN QEVAPDEISS ATIFSPFDTH 180
181 LLEPV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [405-519] |
1 11 21 31 41 51
| | | | | |
1 PSSSSESSAE VMFHGKQMKN FLIDINSFTN QQQQAQDNPS FLPLDIEQSS YDLSEDAMSY 60
61 PIISTQSNRD CTQYDNTKIS QILQSQLNPE YLSENHMRET QQYLNFYNDN FGSQF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.431 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.292 | a.118.1 | ARM repeat |
| View | Download | 0.292 | a.118.1 | ARM repeat |
| View | Download | 0.290 | a.7.1 | Spectrin repeat |
| View | Download | 0.284 | a.118.1 | ARM repeat |
| View | Download | 0.284 | a.118.1 | ARM repeat |
| View | Download | 0.278 | a.152.1 | Antioxidant defence protein AhpD |
| View | Download | 0.236 | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.204 | a.11.2 | Second domain of FERM |
