YRC Public Data Repository - Protein Structure Prediction

Protein:	MCM21
Organism:	Saccharomyces cerevisiae
Length:	368 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MCM21.

Description	E-value	Query Range	Subject Range
MCM21_YEAST - Central kinetochore subunit MCM21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM21 ... MCM21 - Protein involved in minichromosome maintenance; component of the COMA complex (Ctf19p, Okp1p, Mcm21p... gi\|151942293 - gi\|151942293\|gb\|EDN60649.1\| minichromosome maintenance-related protein [Saccharomyces cerevisiae YJM... gi\|190404742 - gi\|190404742\|gb\|EDV08009.1\| central kinetochore subunit MCM21 [Saccharomyces cerevisiae RM11-1a]	0.0	[1..368]	[1..368]
gi\|45201445, gi\|... - gi\|45201445\|ref\|NP_987015.1\| AGR349Wp [Ashbya gossypii ATCC 10895], gi\|44986379\|gb\|AAS54839.1\| AGR34... gi\|44986379 - gi\|44986379\|gb\|AAS54839.1\| AGR349Wp [Ashbya gossypii ATCC 10895]	3.0E-91	[123..359]	[1..232]
gi\|42549163, gi\|... - gi\|46129242\|ref\|XP_388982.1\| hypothetical protein FG08806.1 [Gibberella zeae PH-1], gi\|42549163\|gb\|E...	6.0E-60	[89..288]	[2..197]
gi\|85115669 - gi\|85115669\|ref\|XP_964917.1\| hypothetical protein NCU09100 [Neurospora crassa OR74A] gi\|28926714, gi\|... - gi\|32422097\|ref\|XP_331492.1\| predicted protein [Neurospora crassa], gi\|28926714\|gb\|EAA35681.1\| predi...	1.0E-49	[90..288]	[3..263]
gi\|46432067, gi\|... - gi\|68490705\|ref\|XP_710820.1\| hypothetical protein CaO19.10988 [Candida albicans SC5314], gi\|68490676... orf19.3494, orf1... - CTF5 CGDID:CAL0005120 Assembly 19, Contig19-10181 (58, 948) CDS, translated using codon table 12 (29...	3.0E-45	[118..288]	[8..188]
gi\|67537330, gi\|... - gi\|67537330\|ref\|XP_662439.1\| hypothetical protein AN4835.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	7.0E-36	[131..285]	[34..228]

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Predicted Domain #1

Region A:
Residues: [1-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIDDLQQD IESLLSEINS LEESREKLKA KIKDKRKNEE SANPIVQEFE DLFDQFPQLN  60
   61 NFLFNEHPEL EETDDKDISR AQADIPATPI PYEPKKRAKL ENEEILPEQE WVLKTQPMVQ 120
  121 HQMFDPGVAD LLDTDILTSP SKRKRKLKID DISTSDRSEL EDYIVLENVY RMFGITFFPL 180
  181 VDPIDLKIKD ASGEIFVDRE MLGIRLEVFS ERTSQFEKPH YVLLKKRIKS NSWFLFKHTI 240
  241 PSFIDVQGIF DDTNGGLVIS HDDAYLFAKR VFLQLVEVQK RRQIFKDLEA KKIIHDLDLD 300
  301 LESSMVSFFV KDIKVELFVK QNEIVSCSIL DDIHDFSQNN KSKWEIALLG SLDDLELKLN 360
  361 HSFATIFK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits