YRC Public Data Repository - Protein Structure Prediction

Protein:	YPT10
Organism:	Saccharomyces cerevisiae
Length:	199 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPT10.

Description	E-value	Query Range	Subject Range
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	4.0E-49	[2..198]	[6..200]
gi\|303750, gi\|738940 - gi\|738940\|prf\|\|2001457H GTP-binding protein, gi\|303750\|dbj\|BAA02116.1\| GTP-binding protein [Pisum sa...	4.0E-49	[2..198]	[6..200]
gi\|1616614 - gi\|1616614\|emb\|CAA69701.1\| small GTP-binding protein [Nicotiana plumbaginifolia]	6.0E-49	[2..198]	[6..201]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	6.0E-49	[2..198]	[9..205]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	8.0E-49	[2..198]	[9..205]
gi\|103720 - gi\|103720\|pir\|\|D38625 GTP-binding protein o-rab1 - electric ray (Discopyge ommata)	8.0E-49	[2..198]	[6..201]
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	1.0E-48	[2..198]	[6..200]
gi\|7643790 - gi\|7643790\|gb\|AAF65510.1\| small GTP-binding protein [Capsicum annuum]	2.0E-48	[2..198]	[6..201]
gi\|148230336, gi... - gi\|27924279\|gb\|AAH45014.1\| Rab1-prov protein [Xenopus laevis], gi\|148230336\|ref\|NP_001080138.1\| RAB1... gi\|52345478, gi\|... - gi\|52345478\|ref\|NP_001004787.1\| RAB1A, member RAS oncogene family [Xenopus (Silurana) tropicalis], g...	2.0E-48	[2..199]	[9..204]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATIKVVLL GDSSVGKTSI VTRLKSGKFL AKHAATIGAA FITKTIEVPS NDSSTEKRIH  60
   61 MEIWDTAGQE RYKSLVPMYY RDANIALIVF ELGDVSSLQC AKTWFQDLQD RAQGTQVIIV 120
  121 GNKYDLVCEE HSGEVTIPAE LQGLPYVAVS AKTGYNFDTL NKIIISLVPE SQFKTLSKNN 180
  181 EQGNILEINK KKSGSGCIC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1oivA_
Description:	X-ray structure of the small G protein Rab11a in complex with GDP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits