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View Structure Prediction Details

Protein: GCV3
Organism: Saccharomyces cerevisiae
Length: 170 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCV3.

Description E-value Query
Range		 Subject
Range
GCSH_ORYSI - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1
GCSH_ORYSA - Glycine cleavage system H protein, mitochondrial precursor - Oryza sativa (Rice)
GCSH_ORYSJ - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1
 5.0E-43 [4..170] [2..162]
GCV3 - H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine...
 8.0E-43 [1..170] [8..177]
GCSH_FLAAN - Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1
 2.0E-41 [4..170] [2..159]
gi|3688309 - gi|3688309|emb|CAB16914.1| H-Protein precursor [Flaveria pringlei]
 3.0E-41 [4..170] [2..159]
gi|34420138 - gi|34420138|gb|AAQ67414.1| glycine decarboxylase complex H-protein [Populus tremuloides]
 7.0E-41 [4..170] [2..163]
GCSH2_ARATH - Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=GDH2 PE=2 SV=1
 4.0E-40 [14..170] [1..153]
GCSH_MOUSE - Glycine cleavage system H protein, mitochondrial OS=Mus musculus GN=Gcsh PE=1 SV=1
 4.0E-40 [3..170] [7..169]

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Predicted Domain #1
Region A:
Residues: [1-170] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTTRLWTT RMPAVSKLFL RNSSGNALNK NKLPFLYSSQ GPQAVRYTSQ HEWIAVHQDK  60
   61 TAFVGITKYA TDSLGDATYV ELPEVGTEIS QGESLGSIES VKSASEIYQP ADGTVEEINT 120
  121 NLEENPGVVN EDPMGDGWLV KMKLGEGVNV EQVEGLMSLE QYEKTLVHDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 1dxmA_
Description: Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle