YRC Public Data Repository - Protein Structure Prediction

Protein:	FCERG_RAT
Organism:	Rattus norvegicus
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FCERG_RAT.

Description	E-value	Query Range	Subject Range
gi\|34535715 - gi\|34535715\|dbj\|BAC87407.1\| unnamed protein product [Homo sapiens]	141.0	[0..1]	[83..6]
gi\|109499023 - gi\|109499023\|ref\|XP_001053627.1\| PREDICTED: similar to High affinity immunoglobulin epsilon receptor...	138.0	[0..1]	[86..84]
gi\|90655305 - gi\|90655305\|gb\|ABD96179.1\| CD3 zeta chain variant 2 [Papio anubis] gi\|90655309 - gi\|90655309\|gb\|ABD96181.1\| CD3 zeta chain variant 2 [Cercocebus torquatus]	135.0	[0..1]	[83..6]
gi\|90655313 - gi\|90655313\|gb\|ABD96183.1\| CD3 zeta chain variant 2 [Macaca fascicularis] gi\|116734868, gi... - gi\|90655317\|gb\|ABD96185.1\| CD3 zeta chain variant 2 [Macaca mulatta], gi\|116734868\|ref\|NP_001070891....	135.0	[0..1]	[83..6]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPAVILFLL LLVEEAAALG EPQLCYILDA ILFLYGIVLT LLYCRLKIQV RKADIASREK  60
   61 SDAVYTGLNT RNQETYETLK HEKPPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits