YRC Public Data Repository - Protein Structure Prediction

Protein:	MS4A2
Organism:	Homo sapiens
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MS4A2.

Description	E-value	Query Range	Subject Range
FCERB_MOUSE - High affinity immunoglobulin epsilon receptor subunit beta OS=Mus musculus GN=Ms4a2 PE=1 SV=1	2.0E-77	[1..243]	[1..234]
FCERB_RAT - High affinity immunoglobulin epsilon receptor subunit beta OS=Rattus norvegicus GN=Ms4a2 PE=1 SV=1	7.0E-75	[1..242]	[1..241]
gi\|114637722, gi... - gi\|114637722\|ref\|XP_001136780.1\| PREDICTED: membrane-spanning 4-domains, subfamily A, member 2 isofo...	6.0E-74	[1..244]	[1..244]
gi\|109106011 - gi\|109106011\|ref\|XP_001088362.1\| PREDICTED: membrane-spanning 4-domains, subfamily A, member 2 (Fc f...	2.0E-73	[1..243]	[1..244]
gi\|5042355, gi\|5... - gi\|50978912\|ref\|NP_001003172.1\| membrane-spanning 4-domains, subfamily A, member 2 [Canis lupus fami...	2.0E-73	[1..243]	[1..243]
gi\|47522994, gi\|... - gi\|47522994\|ref\|NP_999257.1\| membrane-spanning 4-domains, subfamily A, member 2 [Sus scrofa], gi\|219...	7.0E-73	[1..243]	[1..242]
gi\|14530172 - gi\|14530172\|emb\|CAC42226.1\| high affinity IgE receptor beta subunit [Ovis aries]	2.0E-70	[1..243]	[1..242]
gi\|149725171, gi... - gi\|149725171\|ref\|XP_001501500.1\| PREDICTED: high affinity IgE receptor beta subunit [Equus caballus]...	1.0E-68	[1..240]	[1..239]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTESNRRAN LALPQEPSSV PAFEVLEISP QEVSSGRLLK SASSPPLHTW LTVLKKEQEF  60
   61 L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [62-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVTQILTAMI CLCFGTVVCS VLDISHIEGD IFSSFKAGYP FWGAIFFSIS GMLSIISERR  60
   61 NATYLVRGSL GANTASSIAG GTGITILIIN LKKSLAYIHI HSCQKFFETK CFMASFSTEI 120
  121 VVMMLFLTIL GLGSAVSLTI CGAGEELKGN KVPEDRVYEE LNIYSATYSE LEDPGEMSPP 180
  181 IDL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.769551
Match:	PF04103.6
Description:	No description for PF04103.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits