YRC Public Data Repository - Protein Structure Prediction

Protein:	ARR1
Organism:	Saccharomyces cerevisiae
Length:	294 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARR1.

Description	E-value	Query Range	Subject Range
ARR1 - Transcriptional activator of the basic leucine zipper (bZIP) family, required for transcription of g... YAP8_YEAST - AP-1-like transcription factor YAP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARR1... gi\|190409917 - gi\|190409917\|gb\|EDV13182.1\| hypothetical protein SCRG_04120 [Saccharomyces cerevisiae RM11-1a]	0.0	[1..294]	[1..294]
gi\|25370541, gi\|... - gi\|4432799\|gb\|AAD20651.1\| bZIP transcription factor family protein [Arabidopsis thaliana], pir\|\|D845...	8.0E-29	[16..158]	[116..250]
gi\|14198191 - gi\|14198191\|gb\|AAH08153.1\| Xbp1 protein [Mus musculus]	1.0E-25	[4..121]	[38..154]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-25	[4..121]	[48..164]
gi\|85085674 - gi\|85085674\|ref\|XP_957544.1\| related to AP-1-like transcription factor [MIPS] [Neurospora crassa OR7... gi\|32405222, gi\|... - gi\|32405222\|ref\|XP_323224.1\| related to AP-1-like transcription factor [MIPS] [Neurospora crassa], g...	3.0E-22	[3..119]	[133..244]
gi\|9858783 - gi\|9858783\|gb\|AAG01130.1\|AF273333_15 BAC19.15 [Lycopersicon esculentum]	3.0E-21	[12..116]	[324..435]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPRGRKGG RKPSLTPPKN KRAAQLRASQ NAFRKRKLER LEELEKKEAQ LTVTNDQIHI  60
   61 LKKENELLHF MLRSLLTERN MPSDERNISK ACCEEKPPTC NTLDGSVVLS STYNSLEIQQ 120
  121 CYVFFKQLLS VCVGKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.9897
Match:	1gd2E_
Description:	PAP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [137-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTVPSPLNSF DRSFYPIGCT NLSNDIPGYS FLNDAMSEIH TFGDFNGELD STFLEFSGTE  60
   61 IKEPNNFITE NTNAIETAAA SMVIRQGFHP RQYYTVDAFG GDVLLSAMDI WSFMKVHPKV 120
  121 NTFDLEILGT ELKKSATCSN FDILISLKHF IKVFSSKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [201-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNFITENTNA IETAAASMVI RQGFHPRQYY TVDAFGGDVL LSAMDIWSFM KVHPKVNTFD  60
   61 LEILGTELKK SATCSNFDIL ISLKHFIKVF SSKL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.29
Match:	1sseB
Description:	Solution structure of the oxidized form of the Yap1 redox domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits